BAC Information

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BAC

Clone NameMSMg01-151J13
Chromosome16 (Build37)
Map Location 28,305,107 - 28,462,920
singlet/doubletdoublet
Overlap geneFgf12
Upstream geneOstn, Uts2d, Ccdc50
Downstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151J13.T7 (MSMg01no151_j13.b1)MSMg01-151J13.TJ (MSMg01no151_j13.g1)
ACCAG353716AG353717
length728731
length of high quality
(start - end)		679 (45 - 723)659 (73 - 731)
definitionCHROMAT_FILE: MSMg01no151_j13.b1 PHD_FILE: MSMg01no151_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:26 2005CHROMAT_FILE: MSMg01no151_j13.g1 PHD_FILE: MSMg01no151_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,305,107 - 28,305,781)(28,462,609 - 28,462,920)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTACCAGTCCTACTTTAAATGTATCAACACATTAATTAACCAGTT
TGTTCTTGAACCTTCAGCTATAACCTCAAACTCTGCTACCCTGGGAAAGT
CTCCTGACACCCATGTCCAAAGTACATCAGTCAAGTCATATGTCAAATTT
GAATATGTCAGAAATAATAAACACAATTTAGTATTTATGAAAATTACTTC
CAATGTTTTCTTTAGAAGACACAAGGGAAGCTGAGGACATCTTGTTTTGA
GGGTGGGAAAAATAAACATAAGGGATCATTTTCTCCAGGCAAGATTGCTT
AAAATCATTTTAAAAATATTCACTGGAGGGAGACTGAGTCCTAGAATCTG
ACCTCCTCCTATTCACCCCCCTCTCCAGGTCTGGGATATCCTGGGTGGAG
AAAAAAGTGGAAGAAAGATTAACTTTCCTTTCAGCAATGTTAAAAATCAC
CAGTGAAAATGATAGCAAGTCTTGGAAAATTCTGCTTGCTGCAAAGGGGG
AAAAAAAAACAACAACAGTAATGCCTGCGTTCCTTAGAGACATCTGAAAA
TGAAACAATCACTCAATGACAAATCCAAAATTAAAATTAAAACATTTCAG
ATAAACATGATCTACTCCAGGAATTCTCGGTAACTGTTATTGCTGTTTTG
AGGGCAACTGAGCCTCACAGAAGGTGAA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATTACATTGGCTACATGTAAAAGAGT
GGCAATATTTATATTTTCAAATATATTAGATTTTTGGGGTACCAAAATGA
ATAGCTTTTTTTGCAGGCAAATAAACTAGTTCATAAACAATGGATACATG
AAATGCAGTGCCACCCAAATCTGCATGTAATTTTTATAGATGCAGAATGA
ATGACTTTCAGAATCATAAGAAACAACAGATTACTGCATATAACCAAAAT
AACCTTAGAAAAGAATAAAGTTAGATATGTCATTCTGATATCAAAGTGTA
TGAAAATCTGCAGTAGTTAAAACAGTATGAAAATGGTGTAAAGACAAATA
TAAAATTCAACAGAACACAAACCCCTCTGGTCGGTGCCAGCTCGGGGTCA
CATTGGGCACGGAGTCGGTGGACACCCCCAAGGTCCCTAGAGGACTCTCC
ACACGATCTTAGGACCACTGGTGAGTGGAACACAACTTCTGCTCCATTCC
AATTGTGCAGGACCTGAGACAGCAATAGGGAAGCAGAAAACCCACCCTGA
CCAGGGTCACAAATCCATTCCGGTCAGCGACAGCACCGGGTCACCTGGGA
GCAGAGTCGGCAGACACGCGCAAGGTCCTTAGAGGACTCTTCACGCGAAT
TTAGGACCTCTGGAGAGTGGAACAAAACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_j13.b1 MSMg01no151_j13.b1 CHROMAT_FILE:
MSMg01no151_j13.b1 PHD_FILE: MSMg01no151_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:26 2005
         (679 letters)



>mm_chr16_28304903_28305981
          Length = 1079

 Score = 1259 bits (651), Expect = 0.0
 Identities = 669/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaccagtcctactttaaatgtatcaacacattaattaaccagtttgttcttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaccagtcctactttaaatgtatcaacacattaattaaccagtttgttcttg 264

                                                                       
Query: 65  aaccttcagctataacctcaaactctgctaccctgggaaagtctcctgacacccatgtcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaccttcagctataacctcaaactctgctaccctgggaaagtctcctgacacccatgtcc 324

                                                                       
Query: 125 aaagtacatcagtcaagtcatatgtcaaatttgaatatgtcagaaataataaacacaatt 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagtagatcagtcaagtcatatgtcaaatttgaatatgtcagaaataataaacacaatt 384

                                                                       
Query: 185 tagtatttatgaaaattacttccaatgttttctttagaagacacaagggaagctgaggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtatttatgaaaattacttccaatgttttctttagaagacacaagggaagctgaggac 444

                                                                       
Query: 245 atcttgttttgagggtgggaaaaataaacataagggatcattttctccaggcaagattgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcttgttttgagggtgggaaaaataaacataagggatcattttctccaggcaagattgc 504

                                                                       
Query: 305 ttaaaatcattttaaaaatattcactggagggagactgagtcctagaatctgacctcctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaaaatcattttaaaaatattcactggagggagactgagtcctagaatctgacctcctc 564

                                                                       
Query: 365 ctattcacccccctctccaggtctgggatatcctgggtggagaaaaaagtggaagaaaga 424
           |||||||  | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctattcattctcttctccaggtctgggatatcctgggtggagaaaaaagtggaagaaaga 624

                                                                       
Query: 425 ttaactttcctttcagcaatgttaaaaatcaccagtgaaaatgatagcaagtcttggaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaactttcctttcagcaatgttaaaaatcaccagtgaaaatgatagcaagtcttggaaa 684

                                                                       
Query: 485 attctgcttgctgcaaagggggaaaaaaaaacaacaacagtaatgcctgcgttccttaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attctgcttgctgcaaagggggaaaaaaaaacaacaacagtaatgcctgcgttccttaga 744

                                                                       
Query: 545 gacatctgaaaatgaaacaatcactcaatgacaaatccaaaattaaaattaaaacatttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacatctgaaaatgaaacaatcactcaatgacaaatccaaaattaaaattaaaacatttc 804

                                                                       
Query: 605 agataaacatgatctactccaggaattctcggtaactgttattgctgttttgagggcaac 664
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 805 agataaacatgatctactccaggaattctcagtaactgttattgctgttttgagggcaac 864

                          
Query: 665 tgagcctcacagaag 679
           |||||||||||||||
Sbjct: 865 tgagcctcacagaag 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no151_j13.g1 MSMg01no151_j13.g1 CHROMAT_FILE:
MSMg01no151_j13.g1 PHD_FILE: MSMg01no151_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:27 2005
         (659 letters)



>mm_chr16_28462609_28463667
          Length = 1059

 Score =  580 bits (300), Expect = e-169
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattacattggctacatgtaaaagagtggcaatatttatattttcaaatatattagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caattacattggctacatgtaaaagagtggcaatatttatattttcaaatatattagatt 253

                                                                       
Query: 61  tttggggtaccaaaatgaatagctttttttgcaggcaaataaactagttcataaacaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 252 tttggggtaccaaaatgaatagctttttttgcaggcaaataaactagttcataaataagg 193

                                                                       
Query: 121 gatacatgaaatgcagtgccacccaaatctgcatgtaatttttatagatgcagaatgaat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gatacatgaaatgcagtaccacccaaatctgcatgtaatttttatagatgcagaatgaat 133

                                                                       
Query: 181 gactttcagaatcataagaaacaacagattactgcatataaccaaaataaccttagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gactttcagaatcataagaaacaacagattactgcatataaccaaaataaccttagaaaa 73

                                                                       
Query: 241 gaataaagttagatatgtcattctgatatcaaagtgtatgaaaatctgcagtagttaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  gaataaagttagatatgtcattctgatatcaaagtgtatgaaaatctgcagtagttaaaa 13

                       
Query: 301 cagtatgaaaat 312
           ||||||||||||
Sbjct: 12  cagtatgaaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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