BAC Information

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BAC

Clone NameMSMg01-151O03
Chromosome16 (Build37)
Map Location 10,945,514 - 10,945,883
singlet/doubletsinglet
Overlap genenone
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik
Downstream geneLitaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151O03.T7 (MSMg01no151_o03.b1)MSMg01-151O03.TJ (MSMg01no151_o03.g1)
ACCAG353923AG353924
length787724
length of high quality
(start - end)
80 (70 - 149)379 (86 - 464)
definitionCHROMAT_FILE: MSMg01no151_o03.b1 PHD_FILE: MSMg01no151_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:49 2005CHROMAT_FILE: MSMg01no151_o03.g1 PHD_FILE: MSMg01no151_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGAAAATTCACTTGGTGAAGCTGGGCAGCAGTGGCACATACCTTTA
ATCCCAGCATTTAGGAGGCAGAGGCAAGTAGATCTTTATGAGCTTGAGGC
CAGCCTGATTTACAAAGCAAGTATGCATGCATGTCTCTATCTATATCTAA
ATATATGTGCATGTCTATTCATATGTGAGTACGTATGCCTCTCTGTATAT
GGGTGTGTATATGCCTATATACGTGCATGTATATTTTTCTCTACCTGCGT
GCATGCATCCACATGTTTGCACTTATCCCTATCATAACTGCGCACCTGTA
TGCCCATCTATATGTCCCGCACTTACGTCTCTACTTATACATGCGCGCCC
GCTGGCTGGAACCCCCCCCTTTACCAGCACCGATTACCCTCCCCCCATTC
CCCCCCCTCCATTTTCCCCCCATCCCCCCCCCCACTGTCCCACCCCTTCC
CCTGTTTTTTCCACCCCCATCTCCCCCCTCGCCCCCCCTTACCTCCCTCC
CCCTATCCCCTTTTCCCCCCCCTCCCTCCTTTATTCCTCCCCCTTTTCCT
TTTTCTCTTCCCCCCCCCCTTCCCCCCCCCACCCCTCCTTTACTCCCCTC
CTTTCCCTTCCCCTTTCCCCTTTCCCTCCCCCCCTTTTCCCCCCCCTTCC
CCCCCTTTTCCCCCCTTTACTCCCCCCCCTTTCCCCCCCTTTTTCTTCTC
CTTCTTTTCCCCCCTCCCCTTTCCCCTTTCCCCCCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTACCTCAGTACCCAGCAGAGAA
TGGAAAGCTTGAATGAATGAATGAATGAATGAATGAATGAATGAATGAAC
AAATTCTAATCAAATTATATGTCCCACCAATTCCATCTTCCTGAAAACCA
CCAATAGCTGTCATCACCACAGACAGAGGCCTTGAGATTCCAGGGACCTG
TGCCAGGACTCCCGGCTTGTTAGCAGAAAGCCAGAAGCCCTGTCTCAAAA
AAAGAAAGAAAGAAAATAAATTTTCTGCTGATTTGAAACACAGCCTAGCA
TGTAGCCCAGGATGGTCTTGAATCCTTCAGCCTTCTAAGTTTGGGATTAC
AGATATCCATCACTACACCCAGCTATTGTGTTTTCTTGATTGGTTTTGTG
GTTTTGTATGCCAAGGGAGTGGGTTTGTTGGGGACAAAACCCAGGGCCTC
ATGCCTGTCACTCTACAGATGAGCTATACCCCGCCCCTCCCTTTTAAAAA
CATCATTACAGTGCCACAAAATGTAACATAGTATGCACAGTCATTCAGTT
CCTCTTTGTGCACAAGCCCTGCCTCCTGCTTATACATGACCCACAGACAG
CCCGTCCATTTGTTTCCCCACCAAGCCAGCCCGACAACACCTGCCCCAAG
AACCCCCCCCCTTTCTCACGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_o03.g1 MSMg01no151_o03.g1 CHROMAT_FILE:
MSMg01no151_o03.g1 PHD_FILE: MSMg01no151_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:49 2005
         (379 letters)



>mm_chr16_10945310_10946084
          Length = 775

 Score =  658 bits (340), Expect = 0.0
 Identities = 366/378 (96%), Gaps = 8/378 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtacccagcagagaatggaaagcttgaatgaatgaatgaatgaatgaatgaatgaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gtacccagcagagaatggaaagcttgaatgaatgaatgaatgaatgaatgaatgaat-aa 263

                                                                       
Query: 61  tgaacaaattctaatcaaattatatgtcccaccaattccatcttcctgaaaaccaccaat 120
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ---acaaattctaatcaaattatatgtcccaccaattccatcttcctgaaaaccaccaat 320

                                                                       
Query: 121 agctgtcatcaccacagacagaggccttgagattccagggacctgtgccaggactcccgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgtcatcaccacagacagaggccttgagattccagggacctgtgccaggactcccgg 380

                                                                       
Query: 181 cttgttagcagaaagccagaagccctgtctcaaaaaaagaaagaaagaaaataaattttc 240
            |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 381 tttgttagcagaaagccagaagccctgtctcaaaaaaagaaagaaa----ataaattttc 436

                                                                       
Query: 241 tgctgatttgaaacacagcctagcatgtagcccaggatggtcttgaatccttcagccttc 300
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 tgctgatttgaaacacggcctagcatgtagcccaggatggtcttgaatcctttagccttc 496

                                                                       
Query: 301 taagtttgggattacagatatccatcactacacccagctattgtgttttcttgattggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 taagtttgggattacagatatccatcactacacccagctattgtgttttcttggttggtt 556

                             
Query: 361 ttgtggttttgtatgcca 378
           ||||||||||||||||||
Sbjct: 557 ttgtggttttgtatgcca 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 775
Length adjustment: 9
Effective length of query: 370
Effective length of database: 766
Effective search space:   283420
Effective search space used:   283420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)