BAC Information

Click to search

BAC

Clone NameMSMg01-151P15
Chromosome16 (Build37)
Map Location 40,858,505 - 41,008,470
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151P15.T7 (MSMg01no151_p15.b1)MSMg01-151P15.TJ (MSMg01no151_p15.g1)
ACCAG353993AG353994
length720723
length of high quality
(start - end)		671 (47 - 717)622 (75 - 696)
definitionCHROMAT_FILE: MSMg01no151_p15.b1 PHD_FILE: MSMg01no151_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:56 2005CHROMAT_FILE: MSMg01no151_p15.g1 PHD_FILE: MSMg01no151_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,007,804 - 41,008,470)(40,858,505 - 40,859,125)
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGCAAGCCGCTTATATTTTAATCAGAACCATTTCAATAAGGAA
CATTTTCAACCTTGATCAGCCACAATCTAAGATTACCCTAATCATCATCT
ATCCTTTGTAGTTTTCTCTTTGGGAGCCTTTGTCTGCAAGTCTAATCATA
GAAATCACAAATTGCAATCTCAAGGAGACACAAAGAGACAACATAAACTT
TGATCCTGAGCATTTCTTCTTGCAGAATTCCAAACAGCAGCCTGGAGTCT
TACAAATTCTCTGTGCCAGCAATGATCAGAAGCCTGGTGGTTGCAGCAGT
AATTGCTCCATAATCATATCTGGAGTTCCTGACCTGGTTTATGCATACAA
TCTATATTCTAATACCACCCAACCGGTCACAAGTTAATAAAAATACCATT
AACGTCCCCCTGTGACTAAGGAAGAGAGGTATTCATCTTCCTAGGCTGTG
TTGGGCAGATATAATTTCCTCAGCTGTTAGTGTAATTAACCGCACTGGCC
TGTAGAGTTCCCTGGAGACTACTCATGGCAGAAGATGACCTTGAAATGTA
TGGTTGGTGACACTGAGCCAAAGGGCCCCATTCATCAAGGGTCTGGGTCA
GCCTCGATTTTGTTTCCCATGACGATACCTGCATTGGGGTCCACGCTGGA
GACAACAAGCATCTCTTTCN

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGCCAGTGTGGAATGAGATCTTAT
CTCAAAGATAGACAGAGAAAGAGAGAAGAGAGAGGGGGCAAGCACTGTTC
AGACCGTCTACATTTCATTGTCTATTTGAATTAGAACTGTTACTTAAATT
ATTTACTTTATGGTAAGTTTGAGTCTAAAAATGCTGTTTCATGAAACACA
GAGATGTGCATCTTAGTAGGGTTAAAACCCAGTTAAGGAGATGTTTGGGC
CTAGGGTCTCTACCATCAGAAATATCTCACAGTCAACCCTCAATTAAATT
CAAGGCCTTCTCCAAACAAGATGGCCAGCTAAGATCCATATGCCAAGCAG
TACTGGATATACCTAAGGCTGAGAACTGGAGTTGCAAGGGCAAGGCTGCC
TTTCATGTTCTTATCATCAAATTATGTTTTCTAAAGGTGTGGGGGCATAT
ATCTATTTATTTTTCAAATGCATCCTAAAGAACTTTTAATAATAAATGAC
TTGAAATAATTGGTACCATTTCATAATCCTCTTGAATGAAAGTGGAATTC
TTCTGCAAATAATTCTAATTCTGCTCCCAATAATGGAAAACAGAATAAGT
AGGAAGGTGGAGTGGAGGTAGGATATGCTATTATCTTTCTTTTTAGGGTC
CAGGCTATTTTCAACTATAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_p15.b1 MSMg01no151_p15.b1 CHROMAT_FILE:
MSMg01no151_p15.b1 PHD_FILE: MSMg01no151_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:56 2005
         (671 letters)



>mm_chr16_41007600_41008670
          Length = 1071

 Score = 1228 bits (635), Expect = 0.0
 Identities = 659/667 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagcaagccgcttatattttaatcagaaccatttcaataaggaacattttcaac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gaattctagcaagctgcttatattttaatcagaaccatttcaataaggaacattttcaac 812

                                                                       
Query: 65  cttgatcagccacaatctaagattaccctaatcatcatctatcctttgtagttttctctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cttgatcagccacaatctaagattaccctaatcatcatctatcctttgtagttttctctt 752

                                                                       
Query: 125 tgggagcctttgtctgcaagtctaatcatagaaatcacaaattgcaatctcaaggagaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tgggagcctttgtctgcaagtctaatcatagaaatcacaaattgcaatctcaaggagaca 692

                                                                       
Query: 185 caaagagacaacataaactttgatcctgagcatttcttcttgcagaattccaaacagcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 caaagagacaacataaactttgatcctgagcatttcttcttgcagaattccaaacagcag 632

                                                                       
Query: 245 cctggagtcttacaaattctctgtgccagcaatgatcagaagcctggtggttgcagcagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cctggagtcttacaaattctctgtgccagcaatgatcagaagcctggtggttgcagcagt 572

                                                                       
Query: 305 aattgctccataatcatatctggagttcctgacctggtttatgcatacaatctatattct 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 571 aattgctccataatcatatctggagttcctgacctggtttatacatacaatctatattct 512

                                                                       
Query: 365 aataccacccaaccggtcacaagttaataaaaataccattaacgtccccctgtgactaag 424
           |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aatagcagtcaaccggtcacaagttaataaaaataccattaacgtccccctgtgactaag 452

                                                                       
Query: 425 gaagagaggtattcatcttcctaggctgtgttgggcagatataatttcctcagctgttag 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggagagaggtattcatcttcctaggctgtgttgggcagatataatttcctcagctgttag 392

                                                                       
Query: 485 tgtaattaaccgcactggcctgtagagttccctggagactactcatggcagaagatgacc 544
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 391 tgtaattaaccgcactggcctgtagagttccccggagactactcatggcagaagatgacc 332

                                                                       
Query: 545 ttgaaatgtatggttggtgacactgagccaaagggccccattcatcaagggtctgggtca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttgaaatgtatggttggtgacactgagccaaagggccccattcatcaagggtctgggtca 272

                                                                       
Query: 605 gcctcgattttgtttcccatgacgatacctgcattggggtccacgctggagacaacaagc 664
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 271 gcctcgattttgtttcccatgacgatacctgcattggggtccacactggagacaacaagc 212

                  
Query: 665 atctctt 671
           |||||||
Sbjct: 211 atctctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no151_p15.g1 MSMg01no151_p15.g1 CHROMAT_FILE:
MSMg01no151_p15.g1 PHD_FILE: MSMg01no151_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:56 2005
         (622 letters)



>mm_chr16_40858305_40859326
          Length = 1022

 Score = 1193 bits (617), Expect = 0.0
 Identities = 620/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggccagtgtggaatgagatcttatctcaaagatagacagagaaagagagaagagagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggccagtgtggaatgagatcttatctcaaagatagacagagaaagagagaagagagag 260

                                                                       
Query: 61  ggggcaagcactgttcagaccgtctacatttcattgtctatttgaattagaactgttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggcaagcactgttcagaccgtctacatttcattgtctatttgaattagaactgttact 320

                                                                       
Query: 121 taaattatttactttatggtaagtttgagtctaaaaatgctgtttcatgaaacacagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaattatttactttatggtaagtttgagtctaaaaatgctgtttcatgaaacacagaga 380

                                                                       
Query: 181 tgtgcatcttagtagggttaaaacccagttaaggagatgtttgggcctagggtctctacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgcatcttagtagggttaaaacccagttaaggagatgtttgggcctagggtctctacc 440

                                                                       
Query: 241 atcagaaatatctcacagtcaaccctcaattaaattcaaggccttctccaaacaagatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagaaatatctcacagtcaaccctcaattaaattcaaggccttctccaaacaagatgg 500

                                                                       
Query: 301 ccagctaagatccatatgccaagcagtactggatatacctaaggctgagaactggagttg 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ccagctaagatccatatgccaagcagtactggatatacctaaggttgagaactggagttg 560

                                                                       
Query: 361 caagggcaaggctgcctttcatgttcttatcatcaaattatgttttctaaaggtgtgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagggcaaggctgcctttcatgttcttatcatcaaattatgttttctaaaggtgtgggg 620

                                                                       
Query: 421 gcatatatctatttatttttcaaatgcatcctaaagaacttttaataataaatgacttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatatatctatttatttttcaaatgcatcctaaagaacttttaataataaatgacttga 680

                                                                       
Query: 481 aataattggtaccatttcataatcctcttgaatgaaagtggaattcttctgcaaataatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aataattggtaccatttcataatcctcttgaatgaaagtggaattcttctgcaaataatt 740

                                                                       
Query: 541 ctaattctgctcccaataatggaaaacagaataagtaggaaggtggagtggaggtaggat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaattctgctcccaataatggaaaacagaataagtaggaaggtggagtggaggtaggat 800

                                
Query: 601 atgctattatctttcttttta 621
           |||||||||||||||||||||
Sbjct: 801 atgctattatctttcttttta 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |