BAC Information

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BAC

Clone NameMSMg01-154J07
Chromosome16 (Build37)
Map Location 39,577,537 - 39,722,256
singlet/doubletdoublet
Overlap genenone
Upstream geneTmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154J07.T7 (MSMg01no154_j07.b1)MSMg01-154J07.TJ (MSMg01no154_j07.g1)
ACCAG355834AG355835
length710712
length of high quality
(start - end)
600 (43 - 642)515 (78 - 592)
definitionCHROMAT_FILE: MSMg01no154_j07.b1 PHD_FILE: MSMg01no154_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:15 2005CHROMAT_FILE: MSMg01no154_j07.g1 PHD_FILE: MSMg01no154_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,577,537 - 39,578,131)(39,721,742 - 39,722,256)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAGAGGATCCGCGGAA
TTCTACAATTCCCGCTGTTTATTTAAATTAAATTTATTTGTGGCCCCAGG
TCTCTGTTACTGGTGTGGGAGCTTTTCATGGGTATATGAACTTATGTTTC
ATTTTCTGTGTACATCTGATAGTGATAAAATAGTGCCTTCACCTAAGTAG
ATATACACAAGTTGTAGTAGATATTTATAAATAACAACAAATAATTTTAA
GACCTCAAAATATCAAACTAACAACAGTTCTCTGATTCTTTCTCATACCA
ATTGTCCTTAATCTGGTACTGGACTGATATGGGAAGTAATCCTACTTCCT
ATTCAAATTTTGCTGATCGATCTTTTTTTTTTTTTTTTTTTGCATTTTTC
TAGAGAACAGTTGTTAAATGTTGAAGATAAACAACTACTACTGGGAATTA
ATATTTAACTAAATAGAGACATGGTCTCATTCCCCCACTTACACTTACAG
AGTAATTGCTTACAGGACCTGCTTTGTATCCTTCAGTTGTCCCTATATTT
TTGCAGAGTTAGAACATTGGTAATCCTTATTTACCTACAATCCATTCAAG
GTGACATTGTTACCAGAGATCTCCATTTTTCTATATCACCCAGGACTGGC
CACATAAATTACATTAAGGGTCATAATGACTAATGTACTCAGTTTAGAAG
GTAGGTTTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGGGCAGAGTTCCTAAGCAG
ACATTGTGAAGCAGTCATTGAAATTACCTTTCCACAGTCAGGTGTATTTA
TAACATTCAAAGGAAAATCAAGTCGGTCTAAGAAGGTTGCAAAACTGAAA
GAAATAGTGGGAAATCATCTCACTTAATTGAGCATTGACATGAGACAAAG
GAAATTGAATGAATTAGCAATTTAGTCACAAAGAGAAGTGGAGGTGTCTT
TGTCTTGTTTTAGTCTTTGGTTTGTTTGGGGTGTTGTTTTCCACAGTAGA
AGATTGTGGATTTAGGAACAAATAAGGAAACTGATGATTCAGAAGGAGAA
AAGATCAAATCTGGAGAATTTATTTCAGGTCCTCCCTGGGACTAACAAGA
ACTTCCCTGTTTGAGGGAACAATTGCTTATTTGGTGAGGCAGAACAAAGC
CCCGAAGAAGCTGTGCTGTCGATAATTCTTAATTAACTTAGACAGCAAGA
AAAAAGTGCAGTAGAGGCTTGAAATGTATGCAACTTGCTCTCAGGTCCAG
GGTAATCTGGGATGCTAGGACTATTCAGTCCTGGAAAACACTGCCTAAAG
GAAGTTGATAATATTATGCGAATAATCAAAGAGTCCAGCTTATCAAACAA
CTGATAACCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_j07.b1 MSMg01no154_j07.b1 CHROMAT_FILE:
MSMg01no154_j07.b1 PHD_FILE: MSMg01no154_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:15 2005
         (600 letters)



>mm_chr16_39577332_39578331
          Length = 1000

 Score = 1143 bits (591), Expect = 0.0
 Identities = 594/595 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctacaattcccgctgtttatttaaattaaatttatttgtggccccaggtctctgt 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctacaattctcgctgtttatttaaattaaatttatttgtggccccaggtctctgt 265

                                                                       
Query: 66  tactggtgtgggagcttttcatgggtatatgaacttatgtttcattttctgtgtacatct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tactggtgtgggagcttttcatgggtatatgaacttatgtttcattttctgtgtacatct 325

                                                                       
Query: 126 gatagtgataaaatagtgccttcacctaagtagatatacacaagttgtagtagatattta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatagtgataaaatagtgccttcacctaagtagatatacacaagttgtagtagatattta 385

                                                                       
Query: 186 taaataacaacaaataattttaagacctcaaaatatcaaactaacaacagttctctgatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 taaataacaacaaataattttaagacctcaaaatatcaaactaacaacagttctctgatt 445

                                                                       
Query: 246 ctttctcataccaattgtccttaatctggtactggactgatatgggaagtaatcctactt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctttctcataccaattgtccttaatctggtactggactgatatgggaagtaatcctactt 505

                                                                       
Query: 306 cctattcaaattttgctgatcgatctttttttttttttttttttgcatttttctagagaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cctattcaaattttgctgatcgatctttttttttttttttttttgcatttttctagagaa 565

                                                                       
Query: 366 cagttgttaaatgttgaagataaacaactactactgggaattaatatttaactaaataga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cagttgttaaatgttgaagataaacaactactactgggaattaatatttaactaaataga 625

                                                                       
Query: 426 gacatggtctcattcccccacttacacttacagagtaattgcttacaggacctgctttgt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gacatggtctcattcccccacttacacttacagagtaattgcttacaggacctgctttgt 685

                                                                       
Query: 486 atccttcagttgtccctatatttttgcagagttagaacattggtaatccttatttaccta 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atccttcagttgtccctatatttttgcagagttagaacattggtaatccttatttaccta 745

                                                                  
Query: 546 caatccattcaaggtgacattgttaccagagatctccatttttctatatcaccca 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 caatccattcaaggtgacattgttaccagagatctccatttttctatatcaccca 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no154_j07.g1 MSMg01no154_j07.g1 CHROMAT_FILE:
MSMg01no154_j07.g1 PHD_FILE: MSMg01no154_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:15 2005
         (515 letters)



>mm_chr16_39721542_39722456
          Length = 915

 Score =  973 bits (503), Expect = 0.0
 Identities = 512/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggggcagagttcctaagcagacattgtgaagcagtcattgaaattacctttccacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgtggggcagagttcctaagcagacattgtgaagcagtcattgaaattacctttccacag 656

                                                                       
Query: 61  tcaggtgtatttataacattcaaaggaaaatcaagtcggtctaagaaggttgcaaaactg 120
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 655 tcaggtgtatttataacattcaaaggaaaatcaagttggtataagaaggttgcaaaactg 596

                                                                       
Query: 121 aaagaaatagtgggaaatcatctcacttaattgagcattgacatgagacaaaggaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aaagaaatagtgggaaatcatctcacttaattgagcattgacatgagacaaaggaaattg 536

                                                                       
Query: 181 aatgaattagcaatttagtcacaaagagaagtggaggtgtctttgtcttgttttagtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 535 aatgaattagcaatttagtcacaaagagaagtggaggtgtctttgtcttattttagtctt 476

                                                                       
Query: 241 tggtttgtttggggtgttgttttccacagtagaagattgtggatttaggaacaaataagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tggtttgtttggggtgttgttttccacagtagaagattgtggatttaggaacaaataagg 416

                                                                       
Query: 301 aaactgatgattcagaaggagaaaagatcaaatctggagaatttatttcaggtcctccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaactgatgattcagaaggagaaaagatcaaatctggagaatttatttcaggtcctccct 356

                                                                       
Query: 361 gggactaacaagaacttccctgtttgagggaacaattgcttatttggtgaggcagaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gggactaacaagaacttccctgtttgagggaacaattgcttatttggtgaggcagaacaa 296

                                                                       
Query: 421 agccccgaagaagctgtgctgtcgataattcttaattaacttagacagcaagaaaaaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agccccgaagaagctgtgctgtcgataattcttaattaacttagacagcaagaaaaaagt 236

                                              
Query: 481 gcagtagaggcttgaaatgtatgcaacttgctctc 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gcagtagaggcttgaaatgtatgcaacttgctctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)