BAC Information

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BAC

Clone NameMSMg01-154L04
Chromosome16 (Build37)
Map Location 8,224,211 - 8,224,836
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L04.T7 (MSMg01no154_l04.b1)MSMg01-154L04.TJ (MSMg01no154_l04.g1)
ACCAG355918AG355919
length720704
length of high quality
(start - end)
447 (47 - 493)626 (73 - 698)
definitionCHROMAT_FILE: MSMg01no154_l04.b1 PHD_FILE: MSMg01no154_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:24 2005CHROMAT_FILE: MSMg01no154_l04.g1 PHD_FILE: MSMg01no154_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACAAAGATTACGGCAACATGCACAACATCTTCAAAGCTTCAAGC
CAGATATGATCCAAGCATGGAAAGAGAGAGAGGTGGACATGGGGCCCCAC
CTCTAACCAAAAAAGTATCTGCAATTGATACCCACTGGCAAAGGGAAAAT
CAGTTTTTTTCCAGCTGAGTCTCCCTGGGCACATCACCCACACTTCAGCG
CAGGCCCCATGCCTAGGAGTAGTTCGCCAAGACAAAATGACCTCAGTGGT
GTCTTTGTGGACTTTTGTTACATTCACCTTTGTTTGTTTGGACATATTTT
ATCTTGCTGAACTCTTGCTTGTTGTTTTGATTTTTGGTTTTGTAGATTTT
CTGTTTCTCTTTTCTATGTTTCTACTGTTTATTTTTGTTTGTTTTGTGTT
TATTTTAGGAGAGAGAAAATTGGGTGGGTAGGGAGGTAGGGAGCCTTTCT
CTCCCGCCGCTTTTCTCCCCTCCCCCGCTTTCTTTCTTCCTTCTTCTCCC
CTTTCCTTCTTTCCTTTTTTTCCCCCCCCTTTACGCTCCTTTCGCTTCTC
CCTTTTCCCCTCCCCACCCCGTCCTTCTTCTTTTTTATTTCCCCCTCTTT
CTTCCATATCCTACTTTGTCTTACTACTCAACCGTATTACCCTAGACCCC
ACCACCACACTTTATTATTT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACATCTTCATCCGAAGGCCACTAGGAG
AAGACTGGCTTCCAGGCAGCTAGGATGAGGGGATGAGGGTCTTAAAGCCC
AGGTTCATAGTGACTTATTTCATCAAGGCCACACCTACTCTAATAAGGCC
ATGCCTCCTAATAGTGCCACTCTCTGGGCTAAGCAAATTCAAACCACCAC
ACCCTTTCTTTCTGTTTTTTGATGCATTTTCACAGCAGTGGGAATAGTAA
TGACCACACTATTCTCCCGTGGACAGAGAAAGGAAAATCCGAGAAGTCAG
ATGACAGACCCATACAGAGAGGAGAACGAGAATGAGGGAGCTTGCTGTAA
AAGCAAGGTGTCAAGACTCCTAAGTCCCTTCTAACATGCTGTTTTCTTCC
TCATCCCTGAGGCTTTCCTTCCACTTAGAGAAACTTTTGAAGAATCCCAG
GAAATTAAAGAATAACGTCCAGCCTGCCAACCCTTCCCTGGTGCACTTAA
GTAAGCTACAGAAAGGCCAGGCCATTTATTTTCAGGAACAGCCTAATGAT
CACCCAGCAAGTCTAGTTACGGATGTGGTTCATCAGGCCACCTGGATATA
CTGGTGCGAAAAGCTCACAGTCCGTCTCGGCCTGATGGATTGCCTGAGTT
ATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l04.g1 MSMg01no154_l04.g1 CHROMAT_FILE:
MSMg01no154_l04.g1 PHD_FILE: MSMg01no154_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:24 2005
         (626 letters)



>mm_chr16_8223832_8224857
          Length = 1026

 Score = 1195 bits (618), Expect = 0.0
 Identities = 624/626 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    tacatcttcatccgaaggccactaggagaagactggcttccaggcagctaggatgagggg 60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1005 tacatcttcatccgaaggccactaggagaagactggcttccaggcagctaagatgagggg 946

                                                                        
Query: 61   atgagggtcttaaagcccaggttcatagtgacttatttcatcaaggccacacctactcta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  atgagggtcttaaagcccaggttcatagtgacttatttcatcaaggccacacctactcta 886

                                                                        
Query: 121  ataaggccatgcctcctaatagtgccactctctgggctaagcaaattcaaaccaccacac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  ataaggccatgcctcctaatagtgccactctctgggctaagcaaattcaaaccaccacac 826

                                                                        
Query: 181  cctttctttctgttttttgatgcattttcacagcagtgggaatagtaatgaccacactat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  cctttctttctgttttttgatgcattttcacagcagtgggaatagtaatgaccacactat 766

                                                                        
Query: 241  tctcccgtggacagagaaaggaaaatccgagaagtcagatgacagacccatacagagagg 300
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  tctcctgtggacagagaaaggaaaatccgagaagtcagatgacagacccatacagagagg 706

                                                                        
Query: 301  agaacgagaatgagggagcttgctgtaaaagcaaggtgtcaagactcctaagtcccttct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  agaacgagaatgagggagcttgctgtaaaagcaaggtgtcaagactcctaagtcccttct 646

                                                                        
Query: 361  aacatgctgttttcttcctcatccctgaggctttccttccacttagagaaacttttgaag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  aacatgctgttttcttcctcatccctgaggctttccttccacttagagaaacttttgaag 586

                                                                        
Query: 421  aatcccaggaaattaaagaataacgtccagcctgccaacccttccctggtgcacttaagt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  aatcccaggaaattaaagaataacgtccagcctgccaacccttccctggtgcacttaagt 526

                                                                        
Query: 481  aagctacagaaaggccaggccatttattttcaggaacagcctaatgatcacccagcaagt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  aagctacagaaaggccaggccatttattttcaggaacagcctaatgatcacccagcaagt 466

                                                                        
Query: 541  ctagttacggatgtggttcatcaggccacctggatatactggtgcgaaaagctcacagtc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465  ctagttacggatgtggttcatcaggccacctggatatactggtgcgaaaagctcacagtc 406

                                      
Query: 601  cgtctcggcctgatggattgcctgag 626
            ||||||||||||||||||||||||||
Sbjct: 405  cgtctcggcctgatggattgcctgag 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)