BAC Information

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BAC

Clone NameMSMg01-155F02
Chromosome16 (Build37)
Map Location 16,418,666 - 16,419,061
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155F02.T7 (MSMg01no155_f02.b1)MSMg01-155F02.TJ (MSMg01no155_f02.g1)
ACCAG356358AG356359
length734739
length of high quality
(start - end)
482 (50 - 531)395 (77 - 471)
definitionCHROMAT_FILE: MSMg01no155_f02.b1 PHD_FILE: MSMg01no155_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:12 2005CHROMAT_FILE: MSMg01no155_f02.g1 PHD_FILE: MSMg01no155_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTTCAGAGACTTGAAGTTCTGTTTGTTTGTTTGTTTGTTTGT
TTGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTATCCTGGAACTCA
CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTACCTCTGCTT
CCCAAGTGCCGGGATCAAAGACATGTGTTACCACTGCCTGGCAAAACTTG
AAGTTCTTATCATACAGATCTTTCACTTGCTTAGTTAGAGTCACACAAAG
GTACTATATTATTTGTGACTACTGTAAAGGGTGTTGTTTTCATAATTTCT
TTCTCAGTCCGTTTATGCTTTGTGTAAAGAAAACCACAGATTTGTTTGAG
TTAATTTTATATCCAGCTAGATTGCTGAAGTTGTTTATCAAGTTTAGGAG
TTCTCTTGTAGAAATTTTGGGGTCACTTATGTATACTATCATATCATCTA
CAAATAGTGATATTTTGACTTCTTCCTTTCCAATTTGCATCCTTTTGATC
TCCTTTTGTTGTCTAATTGCTCTGCCTAGGAATTCAAGTACTAAATTGAA
TAGGTAGGGACTTCACATAGGAATTCAAGTACTAAATTGAATAGGTAGGG
AGAAAGTAAATTGAATAGATAGGGAGAAAGCCTTGTCTATGGCTTTAATG
GGATTGATTGAAGTTTCTCTCCACTTACTTTGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATAAAGGTTGCCATACTGTCT
TCACTGGATTACCTACACCATTTTTTAAATATAGGAATTAACCTTGTAAA
TGTTCCCTGCTGAATTTTCTAAACAAGAGTATATGTTGCCATCAGAACTG
TTTAACTATAATTCCATGGTACTTCAGGGTTGTTGAAGAGCCACTGATGC
CTTCTAAAATCCTCTACTCAAAAATACTTCTGGAGTTCATGATTCTGTTT
TTTGGGGTATTTGGGGAGATTGATTGTTTTCCTCCTTTTGGTTGAGGTGG
AAGGTTTTCCCTCCTTCAGTTATTTTCAGATATCATTTGTTTATTTCTAA
AGCTTTAACTTATTCACAGTGTATTGTCTGAAATGGATTCTTAATCCTCA
TATCTGTCAGTGTGTTGTCATGGCAAATGAGCATGAATAAGAGCAAATCA
ATTCCCAGAAAGCACAGGTCTTATTTATCTCTGCTGTTTTAAGAGTAGAA
GGTAACTTAGCCTTCCTACATCACATGATAAGCACATGGTATGTATAATC
TAAAATTTGAAAGACAGAACAATCTTACCGCTCTATTTAATGTTGTGATC
CTCCAGACTGTATGAATATCACATCCTGACGACGCTTAAGAGTTCCTCTT
ATTACAGTTACCTTCCCCTTTGGAGTGGACCTTGCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_f02.g1 MSMg01no155_f02.g1 CHROMAT_FILE:
MSMg01no155_f02.g1 PHD_FILE: MSMg01no155_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:12 2005
         (395 letters)



>mm_chr16_16418466_16419261
          Length = 796

 Score =  750 bits (388), Expect = 0.0
 Identities = 394/396 (99%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacataaaggttgccatactgtcttcactggattacctacaccattttttaaatatagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aacataaaggttgccatactgtcttcactggattacctacaccattttttaaatatagga 537

                                                                       
Query: 61  attaaccttgtaaatgttccctgctgaattttctaaacaagagtatatgttgccatcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 attaaccttgtaaatgttccctgctgaattttctaaacaagagtatatgttgccatcaga 477

                                                                       
Query: 121 actgtttaactataattccatggtacttcagggttgttgaagagccactgatgccttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 actgtttaactataattccatggtacttcagggttgttgaagagccactgatgccttcta 417

                                                                       
Query: 181 aaatcctctactcaaaaatacttctggagttcatgattctgttttttggggtatttgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaatcctctactcaaaaatacttctggagttcatgattctgttttttggggtatttgggg 357

                                                                       
Query: 241 agattgattgttttcctccttttggttgaggtggaagg-ttttccctccttcagttattt 299
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 356 agattgattgttttcctccttttggttgaggtggaagggttttccctccttcagttattt 297

                                                                       
Query: 300 tcagatatcatttgtttatttctaaagctttaacttattcacagtgtattgtctgaaatg 359
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 296 tcagatatcatttgtttatttctaaagctttaacttattcagagtgtattgtctgaaatg 237

                                               
Query: 360 gattcttaatcctcatatctgtcagtgtgttgtcat 395
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 gattcttaatcctcatatctgtcagtgtgttgtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 796
Length adjustment: 9
Effective length of query: 386
Effective length of database: 787
Effective search space:   303782
Effective search space used:   303782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)