BAC Information

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BAC

Clone NameMSMg01-155J17
Chromosome16 (Build37)
Map Location 75,446,338 - 75,574,563
singlet/doubletdoublet
Overlap geneD930038D03Rik
Upstream geneLOC665042
Downstream geneRbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155J17.T7 (MSMg01no155_j17.b1)MSMg01-155J17.TJ (MSMg01no155_j17.g1)
ACCAG356569AG356570
length735704
length of high quality
(start - end)
374 (45 - 418)231 (64 - 294)
definitionCHROMAT_FILE: MSMg01no155_j17.b1 PHD_FILE: MSMg01no155_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:32 2005CHROMAT_FILE: MSMg01no155_j17.g1 PHD_FILE: MSMg01no155_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,574,194 - 75,574,563)(75,446,338 - 75,446,540)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCATTCAGTTGTATAAACCTATACCAACAAAACGGCACTATTAT
CCTAATGCTCAGATTGAATTTTTATCTTTTCAGAGAAGAAGAGAACATGT
CTTGAATTCACAAAGTTAAGTGCAATGAATAGCTTAAAAGATTTATTTTG
TCCCAAAGTAAAGATAAATCTGCTGATGTACTCAAGGGGCAACGCCAAGT
GTGCAGAGCCACTCTTTGAATCTAATAACTCACTCAACACCCGTTTCAAC
CCAGCGAAGAAAACCGTCTGGATTATTCATGGGTACAGGCCCTTTGGTTC
CACCCCAGTGTGGCTTTCTAGGTTTACTAAAGCCTTTTTGAAACAGGAAG
ATGTGAATCTCATTGTTGTAGACTGGAACCAGGGCGCTACGACTTTCATG
TATTCTAGAGCGGTTAGAAACACCAGAACAGTTGCCTGAGATTTTGAGAG
AAACCATTGAAAATCCTTTTGGTACGTTGGAAAAACTTCCCGTAGACCCG
TGATGTACTATATCTGGCTCGCTACGTGACACCATGAACCGACTACTTCC
TCCCGCACCAGTTGCCACTCCACCTTACACCCCCCCCTCTCAACCTCTAT
CCCCTCCACTCTACACTACAATTCCCCTATTCCCTATTTCCCACTTTTAC
CCTTGCACCCCCCTTTTATCTCACCCCCACTAAAA
TGGAGGACCCCGATTGTACTTTGTAGGNGAANNANCCATTTAATTCATTT
CCCTGNTTTTCCAAATAAGNATGTTCTGCTACACACACACACACACACAC
ACACACACACACACACACACACACACACACTAAAGGCACACTGAAGCAGG
TATAAAATAAACCTGTACTGAGGGTAACCGGGAGAATTGCCCATACCAGA
AGGAATTCCTAAAAACCCCATTAATCCTTTTTTGGAGACCTTCACAGGAT
GATAAATCGCCTTCCTTTTCATGTGAACTCACCACTCTTCTTGTATCCTA
GTTTTCCAAAGNGAGGAGAAATGCATTCTCCGNATTTCATCCTCTCCACA
GCTATGTTTTCAACTCCTCCCTAAGCCCCCCTCAAAAAAAAAAAAAGGTA
CCAATTTTGGAACAGAGAAGATGAAGAGGAGATGGAGTGAATCAATATGG
CTTTTAAGCTAAATTGCCCTCACATGTGAAGCCTATCTGGGAGACTGAAG
TTCCCTTTAATGAGCTCAAAGAAAGTACAGAAAGGATAAGGAAAGGAAAA
AGACAACCCAGGTCAATCCATAGAAAGGCAAGGAAGCACACTCCTGGGTC
CAAAGGAAGGTCACATTTCCCTGGTGCTTCTTTCTCTTTTTATACTTTCC
CACGGCCTTCTAATCCCATGCCCTGACTTGACCAAACATGAGCCCGGTGC
CAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_j17.b1 MSMg01no155_j17.b1 CHROMAT_FILE:
MSMg01no155_j17.b1 PHD_FILE: MSMg01no155_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:32 2005
         (374 letters)



>mm_chr16_75573990_75574763
          Length = 774

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccattcagttgtataaacctataccaacaaaacggcactattatcctaatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 574 gaattctcccattcagttgtataaacctataccaacaaaacggcactgttatcctaatgc 515

                                                                       
Query: 65  tcagattgaatttttatcttttcagagaagaagagaacatgtcttgaattcacaaagtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcagattgaatttttatcttttcagagaagaagagaacatgtcttgaattcacaaagtta 455

                                                                       
Query: 125 agtgcaatgaatagcttaaaagatttattttgtcccaaagtaaagataaatctgctgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agtgcaatgaatagcttaaaagatttattttgtcccaaagtaaagataaatctgctgatg 395

                                                                       
Query: 185 tactcaaggggcaacgccaagtgtgcagagccactctttgaatctaataactcactcaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tactcaaggggcaacgccaagtgtgcagagccactctttgaatctaataactcactcaac 335

                                                                       
Query: 245 acccgtttcaacccagcgaagaaaaccgtctggattattcatgggtacaggccctttggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acccgtttcaacccagcgaagaaaaccgtctggattattcatgggtacaggccctttggt 275

                                                                       
Query: 305 tccaccccagtgtggctttctaggtttactaaagcctttttgaaacaggaagatgtgaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tccaccccagtgtggctttctaggtttactaaagcctttttgaaacaggaagatgtgaat 215

                     
Query: 365 ctcattgttg 374
           ||||||||||
Sbjct: 214 ctcattgttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_j17.g1 MSMg01no155_j17.g1 CHROMAT_FILE:
MSMg01no155_j17.g1 PHD_FILE: MSMg01no155_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:33 2005
         (231 letters)



>mm_chr16_75446110_75446740
          Length = 631

 Score =  354 bits (183), Expect = e-102
 Identities = 198/203 (97%)
 Strand = Plus / Plus

                                                                       
Query: 29  cacacacacacacacacacacacacacacacacacacactaaaggcacactgaagcaggt 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cacacacacacacacacacacacacacacacacacacactaaaggcacactgaagcaggt 288

                                                                       
Query: 89  ataaaataaacctgtactgagggtaaccgggagaattgcccataccagaaggaattccta 148
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 289 ataaaataaacctatactgaggttaaccgggagaattgcccataccagaaggaattcctg 348

                                                                       
Query: 149 aaaaccccattaatccttttttggagaccttcacaggatgataaatcgccttccttttca 208
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaaccccattaatcctttctcggagaccttcacaggatgataaatcgccttccttttca 408

                                  
Query: 209 tgtgaactcaccactcttcttgt 231
           |||||||||||||||||||||||
Sbjct: 409 tgtgaactcaccactcttcttgt 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)