BAC Information

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BAC

Clone NameMSMg01-156J06
Chromosome16 (Build37)
Map Location 93,155,664 - 93,155,942
singlet/doubletsinglet
Overlap genenone
Upstream geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156J06.T7 (MSMg01no156_j06.b1)MSMg01-156J06.TJ (MSMg01no156_j06.g1)
ACCAG357282AG357283
length735757
length of high quality
(start - end)
282 (46 - 327)71 (73 - 143)
definitionCHROMAT_FILE: MSMg01no156_j06.b1 PHD_FILE: MSMg01no156_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:45 2005CHROMAT_FILE: MSMg01no156_j06.g1 PHD_FILE: MSMg01no156_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTCATTTACCATGTGTGCCCTAGGCCAAAGGCAATGGGCCTTG
TTAACTTTCTAAACCCTGGTAGGCAAGTGTTGGTTCAAAACGCTTCTACT
TCCTAAAACATGAAAGTTGTTCACAGTCTAGGAAGGGCTGACAATACTAG
GGGAAGAGACCTTTCAGTTACCAATAGTGTGCAATGTGTAATACCACACC
CCTAAACATGCATGTTCCGATATTTTAACGTACTTAATTGTTAAATGGCA
TTCACAACGAAGAATAGTCTATGAATAAAATATAGTGAACATTATAGTCC
CATATCAGAGTTATTTTTTTTTGACCCCCCCCCGCACATGATAGAAACCC
TAAAGGCTTCACTGAAATGGCCCACACATTCAATGTGACTAAGGCCCTCT
AGTGTCATAACATGCACATGACTGTCATAGAAAGGCAAATAACTTTGTGT
TTTTGGGCCGGTCAATACAATTGAGAAAAATCCCTAATAATATTCTACGT
GACTGACCGACTTCTTCTTTTTACTTACTTTATGCACCTTATTCCCCTTG
CCCCTGTCCTCTCATAATTCAACTGAGCTCCCGTTACTATAATGCCCTGT
TATTCCTGGCCTCTTATTTCCCGTGTTATCCCCTCTACTCCCTTATTAAC
ACGCGGGTCCGCTCGGTCTGTTTATCGGCCCCTAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAATGGGCATCTTTAGTGAAAGCAGT
GGGTTTGTATTTATGACATGCTCTGTGCTGGTTCTGAAGGGGCCATGTTG
GAAGACACTGCCTCCATACATGAGAGCCAATTCTGCAGTAGGGCCGGCCA
GAACAGGGTTAACCTTATACTGCTGGGTTCTCTGTTGAGGGGCATGTCCC
CTGGACACCTAGGCTAAACAGCACCTCTTCCCTGGGCCTCTCTGCCAGTC
TCATTCTATTGCGTTGCCAACAGTTTATGTCGCAGTTTAGTGCTGAGGGA
ATTTTCTTATTTTTTTGCCCCCACCCCCCCCATCCTATGGGCCTTGTTAT
CTAGGACACTATTCTCACCCAAAAAGACATTAATGGGGGAAATCCCGGCC
TTCAGGATGTGATCAGATAGACAATTCAGGGATAAAGATACTTAATGCCC
GTTGTTTATAGTGCACTGTACACGATATTTACCTGTACTTTTGGCGGGAA
GCTTTGCTATTTTTTCCCGTTACTCCCCCGTACTTGCTCTTAGACTTTCC
CATAGCTCGTCTAAACTCGTTGACTCTCTCTTCCCCCGCCCTTCTTCTCT
CATGTTTCCCCTGTTTTACCCTCCCCCCCTCCCATTTTCCATCCTATTAT
CCTTATTCCCCATCCTTCCTTTTTCCGCGCCTTTATTTCTTCTTCGCCTC
TTACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_j06.b1 MSMg01no156_j06.b1 CHROMAT_FILE:
MSMg01no156_j06.b1 PHD_FILE: MSMg01no156_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:45 2005
         (282 letters)



>mm_chr16_93155461_93156142
          Length = 682

 Score =  524 bits (271), Expect = e-153
 Identities = 277/279 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctcatttaccatgtgtgccctaggccaaaggcaatgggccttgttaacttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatctcatttaccatgtgtgccctaggccaaaggcaatgggccttgttaacttt 263

                                                                       
Query: 64  ctaaaccctggtaggcaagtgttggttcaaaacgcttctacttcctaaaacatgaaagtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaaaccctggtaggcaagtgttggttcaaaacgcttctacttcctaaaacatgaaagtt 323

                                                                       
Query: 124 gttcacagtctaggaagggctgacaatactaggggaagagacctttcagttaccaatagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttcacagtctaggaagggctgacaatactaggggaagagacctttcagttaccaatagt 383

                                                                       
Query: 184 gtgcaatgtgtaataccacacccctaaacatgcatgttccgatattttaacgtacttaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgcaatgtgtaataccacacccctaaacatgcatgttccgatattttaacgtacttaat 443

                                                  
Query: 244 tgttaaatggcattcacaacgaagaatagtctatgaata 282
           |||||||||| ||||||||||||||| ||||||||||||
Sbjct: 444 tgttaaatggtattcacaacgaagaaaagtctatgaata 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)