BAC Information

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BAC

Clone NameMSMg01-156N14
Chromosome16 (Build37)
Map Location 50,901,515 - 51,046,702
singlet/doubletdoublet
Overlap geneEG639820
Upstream geneCd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156N14.T7 (MSMg01no156_n14.b1)MSMg01-156N14.TJ (MSMg01no156_n14.g1)
ACCAG357483AG357484
length743853
length of high quality
(start - end)
324 (46 - 369)217 (77 - 293)
definitionCHROMAT_FILE: MSMg01no156_n14.b1 PHD_FILE: MSMg01no156_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:05 2005CHROMAT_FILE: MSMg01no156_n14.g1 PHD_FILE: MSMg01no156_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,046,386 - 51,046,702)(50,901,515 - 50,901,729)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGTTGACTGTGAAATGAGCTCACCAGTCAGGTTAGGACCCAGG
CATGCAAACAAGCAACTACAGGCAAGTGCTGTGCTAGAGGAACCTACCTA
GAACTGTGGGGACAGAGCAAAACTAAGTCACCAGGAAAAAGACTCGAGAG
ACTTCCTATAAAGGGGGAGTTTATAGCTTGTTGTAAAATGAGCACTCGTT
TTTAATCACAGGAAGAATGTACAAGCATCGCAGTGCTGTACAAGAAGAGA
AAGAAAAAGCATGCACATACAAATAGGCTTCTATGCTTCTTTTAACCCTA
AAAACTGAACTGTTTTCTTACACCCCCAGCACCACATGCATCTACTTCTA
TCTGGAGCTGAAGAAATACCCCCCCTTTAAAAAAACCCACCCACTGAAAC
TCAGCAAAGCTTTTACTGAGAAATATTTACCAACCGATATGTGGGCTGAC
GTGGAAATTATAACACATGTCAGTCAGCATCTGCAGAGAAAACAAAATCT
TTAAATGGTGTTTTCATTGTTTTGGGCTATCTGAATTGAACTGTTTACTT
CACATTATCAGCCCCTACCAGGTGCCATGTACTTCGTGAGGCCTTGGAAA
CTTATTGGAACAGTCTTCTAAGATATATTATTTCACTCAGCATACATTCT
TTTTGTATTTATTCTTCTCTCACACAGTACGACCCTACTGAAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGAAAGACTCGATTATCACAAAA
ATAATCAAAGAGTTAGGAAATGGATCTACAGAAATTATAATTCTAAATAT
AATTACGACAAAACCATTGCCACGTGACGACTCATAAAAGATTGAATATA
TGTTGTCATAGATAGAACTTTGCACTAATGTTATGCAATGGTATAGATAG
GTCATAAAGTGAGTGAGTATGTGTGTGTGTGTGTGTGTGTGCGTCTTCCT
TCTCCCTTCTTCCTTTCCTTTTCTTTTTTTTTTTCCTTTCCTTCCCCTTT
TTCCTTCCTCCTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTTCTTTNNA
CTTTTTTCTCTTTTCGCTTTTTTCTTCCCCCCCCCCTTCAAAAAAATTTA
CTTTCTCCCCCTCCGGTTTTAGCCCTCATTTCCCATTCCTTCTCTACCCT
TTTTACGTTTCCCTTTCTCGCTCCCTCCTCTCTTCTTTCTCTCTATTTTT
CCCTTTTCTTTTTCGTTTTTCCCCCTTTTTCCTCACTCTTTCCTCTTCTA
CTTCCTTCTTCCCGCTTTATTTTTTCCTTTCTTTATTCCTTCCCCTTTCC
TTCCTCCCCCATAACCTATCCTTTTTATCATCTACTCCCTTTATCCTCTC
TTTCCTTCCTTCCCCCATTTCCCTCCCCCCCCCCGCCCATATTCCCCTTT
CTTTCCTTTTTTTCCCCCCTCCCCTCTCCGCTTTTTCCTCCCTATTATCG
CTTTTTCTTCACCCCTCTTTTTTTCCCCCTTTTATATTTTTCCCTTTTTC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_n14.b1 MSMg01no156_n14.b1 CHROMAT_FILE:
MSMg01no156_n14.b1 PHD_FILE: MSMg01no156_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:05 2005
         (324 letters)



>mm_chr16_51046181_51046904
          Length = 724

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcagtgttgactgtgaaatgagctcaccagtcaggttaggacccaggcatgcaaaca 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aattcagtgttgactgtgaaatgagctcaccagtcaggttaggacccaggcatgcaaaca 463

                                                                       
Query: 66  agcaactacaggcaagtgctgtgctagaggaacctacctagaactgtggggacagagcaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agcaactacaggcaagtgctgtgctagaggaacctacctagaactgtggggacagagcaa 403

                                                                       
Query: 126 aactaagtcaccaggaaaaagactcgagagacttcctataaagggggagtttatagcttg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aactaagtcaccaggaaaaagactcgagagacttcctataaagggggagtttatagcttg 343

                                                                       
Query: 186 ttgtaaaatgagcactcgtttttaatcacaggaagaatgtacaagcatcgcagtgctgta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttgtaaaatgagcactcgtttttaatcacaggaagaatgtacaagcatcgcagtgctgta 283

                                                                       
Query: 246 caagaagagaaagaaaaagcatgcacatacaaataggcttctatgcttcttttaacccta 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caagaagagaaagaaaaagcatgcacatacaaataggcttctatgcttcttttaacccta 223

                            
Query: 306 aaaactgaactgttttc 322
           |||||||||||||||||
Sbjct: 222 aaaactgaactgttttc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no156_n14.g1 MSMg01no156_n14.g1 CHROMAT_FILE:
MSMg01no156_n14.g1 PHD_FILE: MSMg01no156_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:05 2005
         (217 letters)



>mm_chr16_50901315_50901931
          Length = 617

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaagactcgattatcacaaaaataatcaaagagttaggaaatggatctacagaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggaaagactcgattatcacaaaaataatcaaagagttaggaaatggatctacagaaatt 260

                                                                       
Query: 61  ataattctaaatataattacgacaaaaccattgccacgtgacgactcataaaagattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ataattctaaatataattacgacaaaaccattgccacgtgacgactcataaaatattgaa 320

                                                                       
Query: 121 tatatgttgtcatagatagaactttgcactaatgttatgcaatggtatagataggtcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatgttgtcatagatagaactttgcactaatgttatgcaatggtatagataggtcata 380

                                              
Query: 181 aagtgagtgagtatgtgtgtgtgtgtgtgtgtgtg 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgagtgagtatgtgtgtgtgtgtgtgtgtgtg 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)