BAC Information

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BAC

Clone NameMSMg01-156P20
Chromosome16 (Build37)
Map Location 97,800,155 - 97,800,439
singlet/doubletsinglet
Overlap geneTmprss2
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2
Downstream geneRipk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P20.T7 (MSMg01no156_p20.b1)MSMg01-156P20.TJ (MSMg01no156_p20.g1)
ACCAG357587AG357588
length778717
length of high quality
(start - end)
121 (48 - 168)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no156_p20.b1 PHD_FILE: MSMg01no156_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:14 2005CHROMAT_FILE: MSMg01no156_p20.g1 PHD_FILE: MSMg01no156_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAGGTGGAGCTTTTATCTATGGGTTTGTTTTTATGTATTATA
ATTATGATTTAAATATATAAGATTTATATGTGATTTTGGATACCTGCTTA
GCCTTTTATTATTATGTGTATATGTGTGTGCCTGCATGAGTTCACGCGTA
CTATATGTGCGCGCCAGCCCTCAGATACCACTTGAGAGCACTATAATCTC
TGCACCTGATGTACGTGCTTCTTATGACTTGAACCTCGTCCTCTGCCCCT
TCCTCCACTGTCCCTACCCTTTTTTTTTCCTCCCCTGCACTATCCCCTAT
CATTTCTTTTTTGGTTGNCTCCCGGGAACAAATCCCCCGTTTGTTTTTAT
TTTATGGTATTGTTTGTGTGCCCCCCCCAACNCATNTAAAATCCCCTGGG
GGGGGGGGGTGCTCCCCCCCCCCTCTTTCCCTCCTTCTGCCCCCTCCCTC
CCTCTTTCCCCTTTTCCCCCTCTTCAACTCCTTATCCCTTTTCCTCCCCC
CTCCTTCCTCCTCCCCTTTCTCCCTCCTTTTCCCCCCCCTTTTTTCTCTC
CTCTCTCCCCCCTTTTTATCCCCTTATCCCCTCTATCCCTCTCCATTTCC
TCCTTCCTTCTCCCCGTTTCTCTTTCTCCCCCTTCTCTGCTCCCCCCTTT
TTTTCTTTCTTCATCCCCCCCTCCCCTTCCCGCTATTTATCCACCCTTCT
CCCCTCCTCACTTTCCCTTCTCCCCTAT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTAGAATGCTTTCGATCAGAGGAA
CAGAGAGATTCATGGTCCCTCTTTGTGTGCAGCCATAGCCTTAGGAAGAA
GCTGTAATGGTGTGCATGGGCAGTGTTGGGGTAGGGCAACAATCAGAAGA
TACAGGTTTAGAGTTAAGAACTCATGGAGCATTTCTTTTTCCTTCAACAG
TTCGTCTCTACGGACAAAGCTTCATCCTCCAGGTTTACTCATCTCAGAGG
AACGCCTGGTATCCCGTGTGCCAGGATGATTGGAGTGAGAGCTACGGGAG
AGCAGCATGTTTTTTTTGGCACCCCCCCCCCTATGGCAGCCCAGGAGGGA
CACAATGCCATCATAATGACACTTAAAGACTCTCTCTCCAGCTCTCAGGG
ACTGGATGCTGCAGACACTTGTCACCTTCCTAAAGCTGGCCCTATAAGCA
GAGGGCAAACTCATCCCCTGCTACTGTCAACCTCACCTCACTGCACCCGT
CCTACATCTTTCCTGGCTACTTGGGAATGCCCATTGAGTGCTGGGGTGCC
AGGAGGAAGGGTACAAAACAAGAAAAATAGGTCACAGTCCATCAGATAAG
CTGAGACTTTGTTCTGCTCATTGTACGTGGGAGCCACTGAAGACTTTGGG
CATAGAAGAGACCTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p20.g1 MSMg01no156_p20.g1 CHROMAT_FILE:
MSMg01no156_p20.g1 PHD_FILE: MSMg01no156_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:15 2005
         (285 letters)



>mm_chr16_97799955_97800639
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttagaatgctttcgatcagaggaacagagagattcatggtccctctttgtgtgcagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctttagaatgctttcgatcagaggaacagagagattcatggtccctctttgtgtgcagcc 426

                                                                       
Query: 61  atagccttaggaagaagctgtaatggtgtgcatgggcagtgttggggtagggcaacaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atagccttaggaagaagctgtaatggtgtgcatgggcagtgttggggtagggcaacaatc 366

                                                                       
Query: 121 agaagatacaggtttagagttaagaactcatggagcatttctttttccttcaacagttcg 180
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 365 agaagatacaggtttagagttaagaactcatggaacatttctttctccttcaacagttcg 306

                                                                       
Query: 181 tctctacggacaaagcttcatcctccaggtttactcatctcagaggaacgcctggtatcc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 305 tctctacggacaaagcttcatcctccaggtttactcatctcagaggaaagcctggtatcc 246

                                                        
Query: 241 cgtgtgccaggatgattggagtgagagctacgggagagcagcatg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cgtgtgccaggatgattggagtgagagctacgggagagcagcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)