BAC Information

Click to search

BAC

Clone NameMSMg01-158J07
Chromosome16 (Build37)
Map Location 45,938,704 - 45,939,000
singlet/doubletsinglet
Overlap genenone
Upstream geneCd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418
Downstream genePlcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158J07.T7 (MSMg01no158_j07.b1)MSMg01-158J07.TJ (MSMg01no158_j07.g1)
ACCAG358756AG358757
length742735
length of high quality
(start - end)
165 (47 - 211)293 (78 - 370)
definitionCHROMAT_FILE: MSMg01no158_j07.b1 PHD_FILE: MSMg01no158_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:07 2005CHROMAT_FILE: MSMg01no158_j07.g1 PHD_FILE: MSMg01no158_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGTTCTCCAGAAAGAGTCTCACCATGCTCAGCTCTGACTGGCT
TAGCACTCACTACATTACCGTGATGGTGTGAAGGAAAATGGCCTTCTAGG
TTCATATATTAGTCCCCAGTTGATGAACTGTTGGGAAGATGTGGCTTGCT
TTGTTGGAAGAAGGGTGTAGCTGGCGTTGGACTTTGAGACAGAACCCAGC
CTTTGTCTCTGTCTCTGTCTACCTGTCTACCTACCTGTCTGTCTGTCTCT
CTGTCTGTCTTTGTGTCCGCCTGACTGCCTGCCTCTGTGCCTGTTTTTGT
GACTGTCCTTGTTTCTTATTTTGTCCCTCTCTTCCTCTCTGTCTTTTTCT
GTATGTGTGTGTATATGTCTCCCCCCCCAAGAACACACGATCATTTTCCC
CTGTGCCTATGTGTGTCCCTCTTGTTTGCGCTATCTCCAGCCCCTCCTGT
CCCCCTTTCCGTCTTCCCCTTTTCCTTTGTCCCTGTTTCCCTCCCTCTCT
CCCTTCCCTCCCCCTATCCTGTCACCCTGCGTTTCCCTCCCCCCCCTTTT
TACCTTCCCCCCCTTCCCCCCCTTTTTCCTTCCCCTTTTCCCCTCTCCCC
TTTCCCCCCCTTTTTCCCCCCCCTTTCTTCCCCCCCCTCCCCTCTTTACC
TCCCCTCCTCCTCCTCCTCCCCCCTTTTTCTCCTCCCTCTCT
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTTCAGAAGCAGATGAAGT
CTGGAACTGCAAGGAGAACATGAGATTTATTGAAGAGAGGCCTAAAACAA
ACAAACAAACAAACAAACAAACAAAAAAGCATGAAGATAGTTGTGGGAGG
GAACACAGGAAACAAAATGTAGAATTCTGGATACTCCTCCTGGCCACAGA
CCCCAGCAACAGTAGCACCAGAGACACCAGACAAACCTAAGGATATTCAA
GGCCATTTTCTCCAAGAAGACTCAGTTTCTGCTCCTAGTAATTTCTGCCG
GGGAGCTAAAGAAAGAAAGAGGGAACTTGGAGGCAAGAAAGATGGCTCAG
TAGGTCAAACACTTGCTACTCAAATCCAAAACCCTGCATTTCATCCCCCA
AACCTACACAAAGGTAGAAGGAGAGTTGATCCCATAAAGTTCTCCTCTGA
CCTCCACAAATACAGGCAAGCCCACGCACATATACATACTTAATAAATTA
AATAAGAATGTAAAATAGGAGAAGAGGAATTTTTGTAGGGAAACAAGGCA
AGCAGAGATGAAAACACCCATGTCAAGTAGTGACCCCTGGAAGAAGTCCT
ACTTAAGTAGCTGACTCATGTCTGTCTTTACTGGGTTTTGTTATGTTTAA
CAGTTTGCAAATTAAGATATTTGTGTGAGATTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_j07.g1 MSMg01no158_j07.g1 CHROMAT_FILE:
MSMg01no158_j07.g1 PHD_FILE: MSMg01no158_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:07 2005
         (293 letters)



>mm_chr16_45938402_45939094
          Length = 693

 Score =  532 bits (275), Expect = e-155
 Identities = 290/297 (97%), Gaps = 4/297 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtttcagaagcagatgaagtctggaactgcaaggagaacatgagatttattgaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttggtttcagaagcagatgaagtctggaactgcaaggagaacatgagatttattgaagag 540

                                                                       
Query: 61  aggccta----aaacaaacaaacaaacaaacaaacaaacaaaaaagcatgaagatagttg 116
           |||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 539 aggcctaaaacaaacaaacaaacaaacaaacaaacaaacaaaaaaccatgaagatagttg 480

                                                                       
Query: 117 tgggagggaacacaggaaacaaaatgtagaattctggatactcctcctggccacagaccc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgggagggaacacaggaaacaaaatgtagaattctggatactcctcctggccacagaccc 420

                                                                       
Query: 177 cagcaacagtagcaccagagacaccagacaaacctaaggatattcaaggccattttctcc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cagcaacagtagcaccagagacaccagacaaacctaaggatattcaaggccattttctcc 360

                                                                    
Query: 237 aagaagactcagtttctgctcctagtaatttctgccggggagctaaagaaagaaaga 293
           |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 359 aagaagactcagtttctgctcctagtaatttctgccagggagctagagaaagaaaga 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)