BAC Information

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BAC

Clone NameMSMg01-159F02
Chromosome16 (Build37)
Map Location 57,604,921 - 57,605,206
singlet/doubletsinglet
Overlap gene2610528E23Rik
Upstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 4631422O05Rik
Downstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159F02.T7 (MSMg01no159_f02.b1)MSMg01-159F02.TJ (MSMg01no159_f02.g1)
ACCAG359289AG359290
length723726
length of high quality
(start - end)
304 (49 - 352)286 (79 - 364)
definitionCHROMAT_FILE: MSMg01no159_f02.b1 PHD_FILE: MSMg01no159_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:01 2005CHROMAT_FILE: MSMg01no159_f02.g1 PHD_FILE: MSMg01no159_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTATATATTGGATATTAGCCGTCTATCAGATTTAGGATT
GATAAAGATCTTTTCCCAATCTGTTGGTTGCCTTTTTGTCTTATTGACAG
TGCCCTTTGCCTTACAGAAGCTTTGCAATTTATGAGGTCCCATTTATCGA
TTCTCGATCTTACAGAACAAGCCATTGCTGTTCTGTTCAGGGATTTTTCA
CCTGTGCCCATATGCTTGAGGCTCTTCCTACTTTCTCCTCTATAAGTTTC
AGTGTCTCTGGTTTTATGTAGAGGTCTTTGATCTATTTGAACTTGAGCTT
TGCACAAGGATTTAATAATTCCTCCACTCCCACTCTTCTGCATGAAAACC
GCCAGTTGAGCCAGCACCATTTGTTTAAAATGAAGTGTTTTCCACTGGAT
GGTTCTAGCTCCTTTGTCAAAGATCAAGTGACCATAGATGCAGAAATACT
TAATGAAATTCTCACAAACTGCATCCAAGAACATATCAAAATGATCATCC
ATCATGATAAAGTAGGCTTCATTCCAGGAATGCAGGCATGGTTCAACATA
TGAAAATCCATCATTGTATTCCACTATATAAACAAACTCTAAGAAAAAAA
AACCCACATGATCATCTCATTACATGCTGAGAAAGCATTTGACAAAATCC
AACACCCATTCGTGATATAAGTC
CACGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAATAAATCACATATTAGGA
TTACATCTCAATCACTGACAAAAAGATAAAGTGTACGGTTAAAACTGCTT
ATTTAGTTCTGAACAAAATCAGACTGAGAGTCAACTGACACAGTTTGATA
ATAATGTGCACGCATCGTGTACCTTTTAAAATCAATAATGGGTTTGCTTA
GAGATGGGATTCTTCTCTTTGGTCACAGTAGTTATCAGGAAAAATGCAAG
CGCAAGACAGACTGACTTCAGATCATCCGACTGTGAAGGAGAGCTACCTC
ACTCAACAGGAGAAGCCCAAGCTAATCTCTGACATCTCAGTGCTTCTGTT
TCCTCCCGTATACAACAGGGCCAAAGATAACTACTTCTCTGTACACTTAC
AAAGATGAATAATCTAGTGCTCATAAAGCAGCAAAAACAATGCATGACAG
CAATAGGTAGGCTGAGGCAGGAGAATTAAGAGTTTCAGAATTTAGATCAT
ACTAAGAGCTCGACAAATGAAAACTGGCATTACTGTCATATCCACTGTCT
CCTGGCATTTCTGAACACTCCGGTTTTCTTGTTACATGTATGGTGAGAGG
GGGCATCTAAGACTCATAAGAAGCTATTGAGTCATTTGAGAAACACTCCT
CAAACGATGGGCAGACTGACAGTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_f02.g1 MSMg01no159_f02.g1 CHROMAT_FILE:
MSMg01no159_f02.g1 PHD_FILE: MSMg01no159_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:01 2005
         (286 letters)



>mm_chr16_57604721_57605406
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaataaatcacatattaggattacatctcaatcactgacaaaaagataaagtgtacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaataaatcacatattaggattacatctcaatcactgacaaaaagataaagtgtacgg 260

                                                                       
Query: 61  ttaaaactgcttatttagttctgaacaaaatcagactgagagtcaactgacacagtttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaactgcttatttagttctgaacaaaatcagactgagagtcaactgacacagtttga 320

                                                                       
Query: 121 taataatgtgcacgcatcgtgtaccttttaaaatcaataatgggtttgcttagagatggg 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taataatgtgcacgcatcgtataccttttaaaatcaataatgggtttgcttagagatggg 380

                                                                       
Query: 181 attcttctctttggtcacagtagttatcaggaaaaatgcaagcgcaagacagactgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcttctctttggtcacagtagttatcaggaaaaatgcaagcgcaagacagactgactt 440

                                                         
Query: 241 cagatcatccgactgtgaaggagagctacctcactcaacaggagaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagatcatccgactgtgaaggagagctacctcactcaacaggagaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)