BAC Information

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BAC

Clone NameMSMg01-160J23
Chromosome16 (Build37)
Map Location 63,363,874 - 63,364,013
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160J23.T7 (MSMg01no160_j23.b1)MSMg01-160J23.TJ (MSMg01no160_j23.g1)
ACCAG360245AG360246
length750722
length of high quality
(start - end)
---140 (131 - 270)
definitionCHROMAT_FILE: MSMg01no160_j23.b1 PHD_FILE: MSMg01no160_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:38 2005CHROMAT_FILE: MSMg01no160_j23.g1 PHD_FILE: MSMg01no160_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTAAAGCTACTTGGTAGAATAAACTGGTTGACTGTGTACTAACCTA
TCCTAGCAAAGAGAGTCTAGCCATATTGTCCACGGAAAATACAATTGCGA
AACTTGTTTTTATGTTTGTATTGTTCAGATTATTTCGGCGCCGCAAAACA
TATTTGCTCGCGTAGACCCCTGGGTGTACAGGAACCAACATTTAAAAACA
GCTTGGGCCTGAATTCAAAAATCCGACCGACTCTGACGCGAGAGTGCTAG
GCCTTAAGATCCGGCGGGACAACTTTTATTAAGAGATGCCTGACATGAGA
CTCAGAGAAGATTGAGTAGGTTCCCCGGGCAAGCCCACTGATTTTATACC
ACGAAATGGTAGGTGGGCCCCCCTCCAAAAAAAAAAAAGACTCGGCGGGG
GGTCGTCCGAAAATATCTGACCTAGACCACTGACTCCTCCGACCCCGAGT
GATAGATAGTGTAGCTCATCCATAATTCGCGGGTCAAACTTTGAGCTGAC
TCTTGTCCAGCAATTTACATGTGGAGATGAATTTAAAACTGACCGTGCCA
TGCTGTACCACCTGTCACAAAACGATATTGCCAGAACTGGATAGGGTAAA
TAAATGTTATGAACAAATGCGTATTAATCGCCCTATTTATACATGGGTAT
CATACGGGGTCTTTTGTTATTCATTTCGTTGTATAAACAAGGCCTGTATT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTAGTTGTCTAATAGGAAGTCTCCTATTGTC
TTGGCCTGTTGTCCTGTGAGATGCAACTTACATCAAAAAAATTCTCAAAG
ACATGAGTGATTTCTCAGCACTGGATCTCAGTCAACAACCTAGTAAACTA
GGCACCCAGGAATTCCTTCCAAAAGGAAAATAAAAGACATGAACTCTACA
AGTGTCCCAAAGAATTTTGTAGGTGAAATGGCCAAGCCACAGGACAAGGA
GAGGGAATCCAAGCAGTTCAGGGCATCGTTCCAGACTTTGAAACATAAAG
CTGATTGTTTATGGAACCCCCGCCAGGGCTGTTACAAGGGCAGCAAAAAA
GACAGCAAGCCGCACAGATAAAACTTGACATATGTACGGAGACCGCAGCC
AAACACACAAAGTACTGGAGGGAAGGGAAAATACCTGAGTCTAGGGAAAG
AATGTAAGACAGGGATTGGAAAAAGTATTACTCTAAATTCACAGACTAGG
TACTAATGTTTACTTTGCATTAGCCAGCTCAAAAAAGTCTCACGGTTCCC
AAAATGTCAGGTACAGAAGGATCAGTTTGGAAGTGGTAAAAACGCATCCT
AGAGAAATGACTGCTCTGGATTCTACCAACAAATGTTACATCCTTTAAAT
AGCGCTAAAAGAAGGAGCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_j23.g1 MSMg01no160_j23.g1 CHROMAT_FILE:
MSMg01no160_j23.g1 PHD_FILE: MSMg01no160_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:38 2005
         (140 letters)



>mm_chr16_63363674_63364213
          Length = 540

 Score =  240 bits (124), Expect = 3e-68
 Identities = 136/140 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaaaaaaattctcaaagacatgagtgatttctcagcactggatctcagtcaacaacc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcagaaaaattctcaaagacatgagtgatttctcagcactggatctcagtcaacaacc 260

                                                                       
Query: 61  tagtaaactaggcacccaggaattccttccaaaaggaaaataaaagacatgaactctaca 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tagtaaactaggcacccaggaattccttccagaaggaaaataaaagacatgaactctaca 320

                               
Query: 121 agtgtcccaaagaattttgt 140
           ||||||||| || |||||||
Sbjct: 321 agtgtcccagagtattttgt 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)