BAC Information

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BAC

Clone NameMSMg01-163A02
Chromosome16 (Build37)
Map Location 63,263,440 - 63,263,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163A02.T7 (MSMg01no163_a02.b1)MSMg01-163A02.TJ (MSMg01no163_a02.g1)
ACCAG361951AG361952
length718702
length of high quality
(start - end)
313 (51 - 363)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no163_a02.b1 PHD_FILE: MSMg01no163_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:30 2005CHROMAT_FILE: MSMg01no163_a02.g1 PHD_FILE: MSMg01no163_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATTTTTTCACCGCCCCCGCTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTCTTCAACTGGATGGATTTAGCTCCCCTTGTCGAAGAAC
AAGGTGAACTATTAGGTGTGCGGGCTTATTTTCTGGGGCCCTTCATTTCT
ATTTCCATTGGGTCCAAATTGGTCGGGTCTTAATACCAAGGACCCATGGA
AGTTTTTCTTACCAAATTTGGCCTCTGGTAAATAAAAGGTTTTATAGGGC
CCGGGACCTGGGGGCGAA
CCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTCAAAAAAATTCAGATGTAAATATTTTTTTTC
CTTTGTTGGAAAGAAATGAGGTATTTACAAATAAGGTTTCCCTAAATCAT
TTCAAGAGAACATTCAACTAAGGATAAAATCGCTGAAGTATTGTAAATTT
TTATTGCCTTTACATGTTGTTCGGTGTGTATGTGTTTGGTAATTTAAAAA
AAAATGCTCTGAAGAAGGAAAGTTTATGCCCTAGATATCAAGTTCAACTA
CCTTTTGCCTTTTCTTAAGTTGAATTTCTATATTCTTTGATGCTTTCATC
CCCACTAACAGTTATAAATCCTTCCAAACGAGACCCGCAAATCTGTTCGA
NGTCATGTGGAATTTATTATTTATAAAAAAAAAAAAGAAGAACATTTTTT
AAAAATTAACTTATTTTTTACATTCCTTATTCCATTGCCTGCCACCCTCC
CTCTACCCTCTGACTGTTCCACATTTTTTAACTCTACTTGCTTGAGAACA
ATAGCTTTACACTTCCCGTGCTTCTGTTTTGAACATCAAAATTTATTTCT
GATTTGTTACTGCTAAAAATAAAACCTATTTTGGCCAACTACAGTGTGCC
ATTGTTGATGTTGTGTTGTAGAGTGTGGATTCCCCTTACTCCTTTCAAAG
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_a02.g1 MSMg01no163_a02.g1 CHROMAT_FILE:
MSMg01no163_a02.g1 PHD_FILE: MSMg01no163_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:30 2005
         (289 letters)



>mm_chr16_63263240_63263929
          Length = 690

 Score =  480 bits (248), Expect = e-140
 Identities = 278/288 (96%), Gaps = 1/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagatgtaaatatttttttt-cctttgttggaaagaaatgaggtatttacaaataagg 59
           |||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||
Sbjct: 201 ttcagatgtaaatatttttttttcctttgttggaaagaaatgagatacttaaaaataagg 260

                                                                       
Query: 60  tttccctaaatcatttcaagagaacattcaactaaggataaaatcgctgaagtattgtaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccctaaatcatttcaagagaacattcaactaaggataaaatcgctgaagtattgtaa 320

                                                                       
Query: 120 atttttattgcctttacatgttgttcggtgtgtatgtgtttggtaatttaaaaaaaaatg 179
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 atttttattgcctttacatgttgttcggtgtgtatgtgtttggtgatttaaaaaaaaatg 380

                                                                       
Query: 180 ctctgaagaaggaaagtttatgccctagatatcaagttcaactaccttttgccttttctt 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccgaagaaggaaagtttatgccctagatatcaagttcaactaccttttgccttttctt 440

                                                           
Query: 240 aagttgaatttctatattctttgatgctttcatccccactaacagtta 287
           |||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct: 441 aagttgaactgcaaaattctttgatgctttcatccccactaacagtta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)