BAC Information

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BAC

Clone NameMSMg01-164G14
Chromosome16 (Build37)
Map Location 42,918,124 - 42,918,434
singlet/doubletsinglet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164G14.T7 (MSMg01no164_g14.b1)MSMg01-164G14.TJ (MSMg01no164_g14.g1)
ACCAG362896AG362897
length753751
length of high quality
(start - end)
315 (39 - 353)545 (69 - 613)
definitionCHROMAT_FILE: MSMg01no164_g14.b1 PHD_FILE: MSMg01no164_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:15 2005CHROMAT_FILE: MSMg01no164_g14.g1 PHD_FILE: MSMg01no164_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TGACTATAGTTAGAAGAACTATGTAGGCTCCTTTTGATTGTTGGTATTTT
ATTTCTACCTCCATCCAGAAATCATTTTCAATGGAAAAGTAAGAATTTCT
TTCCATTAACATGATTTAATTAATAACTATTATATCAAGTGGCTCACACA
CATTTATGCCTCCCAAAATTAGATACTACCACTTAACATAATGAGAATTT
GATAAAGGTTCATTAGATTTGGGGAAAATAATATAATGTAGTGAAAAAAA
CACAGACCCTGAATCTCATCTTTGGTGTACACAGCTGTCAACTAATGTCA
CAATGTTTTCTACCCCCCCCCCCCCATCTGAAGCACAGACAGACTATCAC
TGTACATGCCCACTTGTAAGAAAAGATAAATTAAGTAACCTGTGTGAAAA
ACAAAAAGTATTGTCCTTCTTCCGTAAGTTTTGGTTATAAGACAAGACTA
AACTTTTAATATATGGCAGTACTGACTAGCCTTTCACATGTAAAATACAG
CTGTATTTACTTAAGGAATCATATGATTGATGAATTTGAATTTGGATGCA
AGGATATACATATTGTAACATTAGACCTTAAAAAAATAAAAAGCAGTCAT
TCTCACAGTTTTGCATTAAAAACTGATGGAGTAGCTTTTATAAGATACCT
GTGACTTTGTAAATCCTGCATATGTAAACTCACTTGCTGATTGTGATACA
TCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTGTCAGCACCCAGGCTGTCTCGGCTGTTT
TACTAATGTTATAAAACATGGTGAGAAGGACAATTTACAGAAGGAGAGGT
TTATTTGACTACAATACTAGACAGCTAGGATTACATCACAGTGAGAAAGT
GTGGCAGCGAGCAGCCAGCATGGCAGCTGAAGCTGAGGCCTCGCCTCTTC
TTGTATTACAGGCAAGTATCAGAAAAGAACTTTAGTCAAGTGGCTCAAGC
ATTTAAACTCTCCCCCACACCCTGTATCATACTTTCTCCAGTAAGGACAC
CATGATGGTTTGTATATGCTTGGCCCAGGGGGTGGCAGTAATTAGAAGTT
GTGGCCCTGCCGGAGTAGGTGTACCCTTATTGGAGTAGGTGTGTCGCTGT
GAGTGTGGACTTTAACACCCTCGTTCTAGCTGCCTGGAAGTCAGTATTCT
GCTAACAGCCTTCAGATAAAGATGTAGAACTCTCAGCTCTGCCTGTACCA
TGCCTGTTTAGATGCTGCCATGCTCCTGCCTTTATGATACTGGACTGAAC
CTATGAACCCGTAAGCCAGTCCCAATTAAATGTTGTCCTTTATAAGAGTT
GCCTTGACCATGGTGTCTGTTCACAGCAGCAAAACCCTAACTAAGACAGA
CTCTCATCTTTAACCCCCTAAATATCACTATGTATTGTGGAACCAGTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_g14.b1 MSMg01no164_g14.b1 CHROMAT_FILE:
MSMg01no164_g14.b1 PHD_FILE: MSMg01no164_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:15 2005
         (315 letters)



>mm_chr16_42917920_42918634
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgactatagttagaagaactatgtaggctccttttgattgttggtattttat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcaatgactatagttagaagaactatgtaggctccttttgattgttggtattttat 456

                                                                       
Query: 65  ttctacctccatccagaaatcattttcaatggaaaagtaagaatttctttccattaacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttctacctccatccagaaatcattttcaatggaaaagtaagaatttctttccattaacat 396

                                                                       
Query: 125 gatttaattaataactattatatcaagtggctcacacacatttatgcctcccaaaattag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gatttaattaataactattatatcaagtggctcacacacatttatgcctcccaaaattag 336

                                                                       
Query: 185 atactaccacttaacataatgagaatttgataaaggttcattagatttggggaaaataat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atactaccacttaacataatgagaatttgataaaggttcattagatttggggaaaataat 276

                                                                       
Query: 245 ataatgtagtgaaaaaaacacagaccctgaatctcatctttggtgtacacagctgtcaac 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 275 ataatgtagtgaaaaaaacacagaccctgaatctcaactttggtgtacacagctgtcaac 216

                      
Query: 305 taatgtcacaa 315
           |||||||||||
Sbjct: 215 taatgtcacaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)