BAC Information

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BAC

Clone NameMSMg01-164H24
Chromosome16 (Build37)
Map Location 65,039,185 - 65,039,580
singlet/doubletsinglet
Overlap geneHtr1f
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, LOC668247
Downstream geneLOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164H24.T7 (MSMg01no164_h24.b1)MSMg01-164H24.TJ (MSMg01no164_h24.g1)
ACCAG362959AG362960
length741760
length of high quality
(start - end)
321 (43 - 363)460 (70 - 529)
definitionCHROMAT_FILE: MSMg01no164_h24.b1 PHD_FILE: MSMg01no164_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:22 2005CHROMAT_FILE: MSMg01no164_h24.g1 PHD_FILE: MSMg01no164_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTTCACTGGGGCATAGAGCCTTCTCAGGACCAAGGTCCTCTCCTCCC
ATTGATGTCCAATAAGGCCATCCTCTGCTACATATGCAGCTGGAGCCATA
GGTTCCTTCATGTGTACTCTTTGATTGGTGATTTAGTCCCTGGGAGCTCT
AGGGGTACTGATTGCTTCATATTGTTGTTCCTCCTATGGGTTTGCAAGCT
CCTTGGGTCCTTTCTCTAGCTCCTCCTTTGGGCACCTTGTGCTTAATCCC
ATGGTTGGCTAAGAGCATTCACCTTTGTATTTGTCAGACACTGGCAGAGG
CTCTCAGGATACTGTTATATCACCCCCCTCCCAGCAAGTACTTATTGGCA
TCCACAATAGTGTCTGAGCTTGGTGACTCTATATGATATGGATCCTCAGG
TGGGGAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCATACTTTGTC
TCTATATCTCCTCCCATGGGTATTTTGATCCCCCTTCTAAGAAGGACCAC
ATTGTGGCCTTCCTTCTTCTTGAGTTTCATGTGGTCTGTGAATTGTATCT
TGGGTATTCCAAGCTTCTGGGCTAATATCCACTTATCAGTGAGTGCATAC
CATGTGTGTTCTTTTGTGATTGGGTTACCTCACTCAGGATAATATTTTCT
AGTTTCATGCATTTCATGAATTTCATAGATTCATTGTTTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGCCGAATCATTTTGGTCATGAATTTTCCTTTTAATCTT
ATTAGCTGCCCGTGTTGCCTTTCACTTCATTAACCTTGCTTAAAATCATT
TGTGGGCATTCGATTTCTTTGGAGTCAATCGTTAGAGAGTGACTGTACTC
CCTTGATATAGTGTTCTACCCCGGGCTTGTTTTTCTCTTTGTTTTCATGC
TTCCTATCTCCCTTGTGTTACTACTTATGCCTTTGGTAGGTCAGTGTTCC
TGTCAATTTCTTAAAACATCTGGAATTTACTTTGTACATGGTGTGAAGTA
GAAGGTGAACTGGATTTCCTACTAATATAATAATCAAATGTCTTTATTTA
AAAACCCATATTTTCCCCCCACCAAATTGATGTATAAACATATAATATAT
AATATATAATTAATATTATAATATTATAATATAATATTATTATAATATTA
TATATTATATATTATATATTATATGTTCTATGCGCAGCCTGGTGTTTGGC
GCNCACCCCTTTCCTTTCTTCCCTCATTTTTCACTTCTTCTTACCGCTTT
TCTTTCCTTTCCCTTCTTTCCCATTCCTTCTCCTTTTTACCATCTTTCTC
CTTCCATCTCGTTTTTCCTCATTCCTTTTCATTCACCCTCCTTTTCCCTT
TTTTTCCTTTCCTTTTTTTCGCTCGCACTTCCGGCTTCTCCGTATTCTCC
TTCATCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_h24.g1 MSMg01no164_h24.g1 CHROMAT_FILE:
MSMg01no164_h24.g1 PHD_FILE: MSMg01no164_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:22 2005
         (460 letters)



>mm_chr16_65039134_65039993
          Length = 860

 Score =  721 bits (373), Expect = 0.0
 Identities = 392/399 (98%), Gaps = 4/399 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttggtcatgaattttccttttaatcttattagctgcccgtgttgcctttcacttca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 447 cattttggtcatgaattttccttttaatcttattagctgcccgtgttgcctttcacctca 388

                                                                       
Query: 61  ttaaccttgcttaaaatcatttgtgggcattcgatttctttggagtcaatcgttagagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttaaccttgcttaaaatcatttgtgggcattcgatttctttggagtcaatcgttagagag 328

                                                                       
Query: 121 tgactgtactcccttgatatagtgttctaccccgggcttgtttttctctttgttttcatg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgactatactcccttgatatagtgttctaccccgggcttgtttttctctttgttttcatg 268

                                                                       
Query: 181 cttcctatctcccttgtgttactacttatgcctttggtaggtcagtgttcctgtcaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttcctatctcccttgtgttactacttatgcctttggtaggtcagtgttcctgtcaattt 208

                                                                       
Query: 241 cttaaaacatctggaatttactttgtacatggtgtgaagtagaaggtgaactggatttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cttaaaacatctggaatttactttgtacatggtgtgaagtagaaggtgaactggatttcc 148

                                                                       
Query: 301 tactaatataataatcaaatgtctttatttaaaaacccatattttccccccaccaaattg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 147 tactaatataataatcaaatgtctttatttaaaaacccatattttctccccaccaaattg 88

                                                  
Query: 361 atgtataaacatataatatataatatataatta-atatt 398
           |||||||||||||||||||||  |||||| ||| |||||
Sbjct: 87  atgtataaacatataatatat--tatata-ttatatatt 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)