Query= MSMg01no169_m16.b1 MSMg01no169_m16.b1 CHROMAT_FILE:
MSMg01no169_m16.b1 PHD_FILE: MSMg01no169_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:34 2005
(322 letters)
>mm_chr16_29657667_29658388
Length = 722
Score = 607 bits (314), Expect = e-178
Identities = 317/318 (99%)
Strand = Plus / Minus
Query: 5 gaattcatttacctacctcagtgcccattcagagaaaggggtgggacagggaacaagagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcatttacctacctcagtgcccattcagagaaaggggtgggacagggaacaagagc 463
Query: 65 tgctcggaggccaaggagagtttgggggtcgcactacattacaagatttgacaggccttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgctcggaggccaaggagagtttgggggtcgcactacattacaagatttgacaggccttt 403
Query: 125 gccagccttcagtttctttgtatcttttacataatggagcgacacaaactgagcagccgt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gccagccttcagtttctttgtatcttttacataatggagcgacacaaactgagcagccgg 343
Query: 185 gatccgtgctgccgccctagctcggagcaccctctttgcaaatgctaatagtattgcagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gatccgtgctgccgccctagctcggagcaccctctttgcaaatgctaatagtattgcagc 283
Query: 245 atcctgtcacccgcttacacaacaaaaggatgttgattttcacatgaaccagaacagccg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atcctgtcacccgcttacacaacaaaaggatgttgattttcacatgaaccagaacagccg 223
Query: 305 cattgtacacaagtttgt 322
||||||||||||||||||
Sbjct: 222 cattgtacacaagtttgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no169_m16.g1 MSMg01no169_m16.g1 CHROMAT_FILE:
MSMg01no169_m16.g1 PHD_FILE: MSMg01no169_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:35 2005
(544 letters)
>mm_chr16_29602759_29603702
Length = 944
Score = 864 bits (447), Expect = 0.0
Identities = 502/545 (92%), Gaps = 41/545 (7%)
Strand = Plus / Plus
Query: 1 tgattgatcttttagggattgatgataaaaatcattatttaaaaatcagttctatataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgattgatcttttagggattgatgataaaaatcattatttaaaaatcagttctatataat 260
Query: 61 gtagtaagtagctacctttctggtataaacttttcccacagcagttattctatataaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtaagtagctacctttctggtataaacttttcccacagcagttattctatataaata 320
Query: 121 gcatataatcaaaacttatttttataagccaaaagagatactgatcatcttggatctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatataatcaaaacttatttttataagccaaaagagatactgatcatcttggatctttt 380
Query: 181 tagggaaaacatacaagaagaagcaatctgaatgaaatcatataactattctgtttctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagggaaaacatacaagaagaagcaatctgaatgaaatcatataactattctgtttctgg 440
Query: 241 tgcacggctttccttgacctgtcatggagtcccatgtataactgtactagagagcctgtg 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcacggctttccttgacctgccatggagtcccatgtataactgtactagagagcctgtg 500
Query: 301 ctttggctggcccctgtctttcttgaggccagtgtgccatgagttaagactccttaccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttggctggcccctgtctttcttgaggccagtgtgccatgagttaagactccttaccct 560
Query: 361 ccttactgcccagatcacaacacccttacagtgtactcaataagctattcatttatt-ta 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 561 ccttactgcccagatcacaacacccttacagtgtactcaataagctattc---tattct- 616
Query: 420 tttatttatttatttatttatttatttatttatttatttatttatttattttggtttttc 479
|||||||||||||||| ||||||||
Sbjct: 617 tttatttatttattta------------------------------------ggtttttc 640
Query: 480 gagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctg 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gagacagggtttctctgtgtatccctggctgtcctggaactcactctgtagaccaggctg 700
Query: 540 gcctc 544
|||||
Sbjct: 701 gcctc 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
