BAC Information

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BAC

Clone NameMSMg01-172I02
Chromosome16 (Build37)
Map Location 10,882,351 - 10,882,656
singlet/doubletsinglet
Overlap geneA630055G03Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1
Downstream geneLitaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172I02.T7 (MSMg01no172_i02.b1)MSMg01-172I02.TJ (MSMg01no172_i02.g1)
ACCAG368397AG368398
length713633
length of high quality
(start - end)
316 (47 - 362)---
definitionCHROMAT_FILE: MSMg01no172_i02.b1 PHD_FILE: MSMg01no172_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:59 2005CHROMAT_FILE: MSMg01no172_i02.g1 PHD_FILE: MSMg01no172_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCCCCACACTCTCAACTGGGTGAGGTTTTGCACTGCCTGGGG
AAATGTCTGGTGGCTAAGCCAGGACAGTAACGTTGCTAAACACCCATGGG
TGCATAGAACAGTCTCTACTGCAGATTCTATGGCCCCACAGATAAGCAAC
TTGCAGAAGGGCTGCATGGAGGACTCCTGGGAGCAGATTGGGGTTCCGGA
GTAAGGCTGCTGCCCATATTCCAGAGGTCTCCTGCTATACAAACCCAAGA
ATGTGGGCTCTTGGAAGATACACAGTCCAGAGCCATGTTTAGCCCTTTTA
GGGAAGCTGATTTTTAGATCCAGGTGCGGNCCACCTAGACAGAAGCTGCA
CGAGTGGGACCGGGCCCACACTTGGAAAGACCACTCACACTGGGGACTCT
CTGACCCTCTCACCTCAGGCTAGCGGGTTAGTGCTGAACTGGACATGCTC
ATGCCGGCTCCAGCACAGAGCTGCTGTCGTGGGGCTGGTGCCGCCTCCCC
TCCATTCTGGGCTGCTGTCCTGGATCCGCCCCTTCCACAGCCAATGTAAT
CACCCCAGCATCCCCAGCTCCTAAGGTTCCAGACCGTGTAGCCTACGCGG
TGCCATTTCTTCCTAGTCTGTCCAAGGCCTGTATTGTACTCTAGAGAACT
CCTTTCATACATT
ATGGTTGCCTTTTTTAATTAATAATTATTTTTCNNNNTTTCTATGATAXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGAAATCCGGGGAAGCACCCCCAGTTTTGGGGGTTCACC
AACTTTTTAAATAAAAAGAATCCCCCCTGGAAATCAAGGGGTTAAAAAAA
CATGGGAGGGTCTCTCTGGAAAAGGCCTTAAAAAAGCCTTTTAAAAAGGT
TTAATAGTATGTATAAAAGGGAGGTCCCCCAAAAAAAAATTCCTTAAAAA
TAGGGGGAGAGTTGTGGGGAAAACCCCGCGTTTCCAACCCTCATAACAAA
AAAAAATATTTTTGCAAAGCTAAAAAAGCGATATCAAACCCCTCCGCGGA
AAAGTCAGGTCCGATTTTAATAACAAGGTCTTGGGGGGTTTTCAATTCCC
TCTTATACAATATAACCCTCTTTTTTTTTTTTTTCCCCCCCCCCCCCCCC
CCCCCTCCCAGCCTAAAATGTACCATATAAAGTGTTGGGGTTTGTTTTTT
TCTCTTTGCCGGTTTTAAGAAAAAAAAAAAAAATTACTTTCCTCTTCGCG
CTTCGCCGGGGGGTCCCATAATATATCATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_i02.b1 MSMg01no172_i02.b1 CHROMAT_FILE:
MSMg01no172_i02.b1 PHD_FILE: MSMg01no172_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:59 2005
         (316 letters)



>mm_chr16_10882143_10882858
          Length = 716

 Score =  538 bits (278), Expect = e-157
 Identities = 299/306 (97%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcagtccccacactctcaactgggtgaggttttgcactgcctggggaaatgtctggtggc 68
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcagtccccacactgtcaactgggtgaggttttgcactgcctggggaaatgtctggtggc 455

                                                                       
Query: 69  taagccaggacagtaacgttgctaaacacccatgggtgcatagaacagtctctactgcag 128
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 taagccaggagagtaacattgctaaacacccatgggtgcatagaacagtctctactgcag 395

                                                                       
Query: 129 attctatggccccacagataagcaacttgcagaagggctgcatggaggactcctgggagc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 attctatggccccacagataagcaacttgcagaagggctgcatggaggactcctgggagc 335

                                                                       
Query: 189 agattggggttccggagtaaggctgctgcccatattccagaggtctcctgctatacaaac 248
           || |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct: 334 aggttggggttccggagtaaggctgctgcccatatccccgagggctcctgctatacaaac 275

                                                                       
Query: 249 ccaagaatgtgggctcttggaagatacacagtccagagccatgtttagcccttttaggga 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ccaagaatgtgggctcttggaagatacacagtccagagccatgtttagcccttttaggga 215

                 
Query: 309 agctga 314
           ||||||
Sbjct: 214 agctga 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)