BAC Information

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BAC

Clone NameMSMg01-172L23
Chromosome16 (Build37)
Map Location 52,418,759 - 52,419,007
singlet/doubletsinglet
Overlap geneAlcam
Upstream geneCblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172L23.T7 (MSMg01no172_l23.b1)MSMg01-172L23.TJ (MSMg01no172_l23.g1)
ACCAG368564AG368565
length775750
length of high quality
(start - end)
251 (36 - 286)249 (65 - 313)
definitionCHROMAT_FILE: MSMg01no172_l23.b1 PHD_FILE: MSMg01no172_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:17 2005CHROMAT_FILE: MSMg01no172_l23.g1 PHD_FILE: MSMg01no172_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGC
CCATACCTAAAAGCAATATAGAGCAAACCAGTAGCCAACATCAAACTGAA
TGAAGAGAAACTCCCAGCAATCCCACTAAAATCAGGGACTAGACAAGGCT
ACCCACTCACCTTCTCTATTCAATATAGTACTTGAAGTCCTTGCCAGAGC
AATTACACAATAAAAGGAGGTCAAAGTAAGTGGAAAGAAACTTGAAGCAA
TCCTACTAAAATCAGGGATGAGACAAGGCTGTCCACAGTTTCCGTATCTA
TTCAGTATATTTCTCGATGTCCTAGCCACAGCAAAAAGAGGTCAAATTTT
TATAATTTCCGAAGCGAGCCCCAATTATATCACTATTTGCAGATGATATG
ATAGTATACTTAAGAAGAAAACAAAAATTCCTCCGGAGAACTCCTACGCT
GATAAACCACTTCAGCAAAGTGGCTGGATATAAAATTATCTCACACAAAT
CGGCGGCCTTTCTCTACACTAAGGATAAACAGGCTGATACATATATTACG
CAAGTTTCACACTTCACAATATTTTCTACCCCCATTACTTATTTTCTGGT
AATGACTCTTACCACTCCCCGTGTAAGATCTGTATTGATGTAAAACTTCA
CGCTCTCTGACCGATTGAACTTCCACGAATTTTTCTCATATTCACGACTC
CCATTCTTCCATGCTCCATGGGATCTCCTTTAACTTTAAAAACAGCTATA
TACGCGCTACACCTCTCCCCTGAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACTGAACTGTGTGTGGAAGAATGTACACAGCCACAC
AGTAATAGGATCCCAGGATGAGTCAGCACAAACACAGTACACAGCTCTGG
CCTCACAAGCAGGAAAATGGCAGTCTCTTGGTACCAGTAGGTCAACTATT
TCCCTAAACCATTTCAAATATCAGCAGCAGCAACAAATCCGTGAAGAAAA
GCATGATAACAATCTCGCCAATATTAAAATGACTCATCAATAGTCTTTCA
TAGAATACTGATTAAAAGGGGGGAGAAATGACAATCTGTATGTCCAAGGA
GAATATGCAGCGACGTAGCATGAAGTTTTCACCCAGGCAGAATGGAGGTT
TCTCAACAGAATAACTGCATATAGATGGGAAATAGAGGACGTGACATTTA
TAGAGAACACATTCTGAAAAAGCCCACTGCTCTGCATGTTTACCCATTTA
ACTCTCACAACAAAGTGGAACCGACTATAATTATCTCACTATTTCCTGAC
CTAGGAAAAACAAAGAGACTGGTCAGCTCAAGGTAGCATAGTGATGAATA
GTTCAGGCTGCAAAAAGAAATGTTGTCTGACGGGATAATTCATTACCTTT
TATTAAAGTCCATTCCGCTCATTTTTCAATTTACCCTGTTTTTGACGCCC
ATTATTTTTTTCCTCCTTTCCCCCCCCTCCTTTCCATTCGTGTTTCTCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_l23.g1 MSMg01no172_l23.g1 CHROMAT_FILE:
MSMg01no172_l23.g1 PHD_FILE: MSMg01no172_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:17 2005
         (249 letters)



>mm_chr16_52418559_52419207
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaactgtgtgtggaagaatgtacacagccacacagtaataggatcccaggatgagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 actgaactgtgtgtggaagaatgtacacagccacacagtaataggatgtcaggatgagtc 260

                                                                       
Query: 61  agcacaaacacagtacacagctctggcctcacaagcaggaaaatggcagtctcttggtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcacaaacacagtacacagctctggcctcacaagcaggaaaatggcagtctcttggtac 320

                                                                       
Query: 121 cagtaggtcaactatttccctaaaccatttcaaatatcagcagcagcaacaaatccgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtaggtcaactatttccctaaaccatttcaaatatcagcagcagcaacaaatccgtga 380

                                                                       
Query: 181 agaaaagcatgataacaatctcgccaatattaaaatgactcatcaatagtctttcataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaagcatgataacaatctcgccaatattaaaatgactcatcaatagtctttcataga 440

                    
Query: 241 atactgatt 249
           |||||||||
Sbjct: 441 atactgatt 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)