BAC Information

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BAC

Clone NameMSMg01-173G09
Chromosome16 (Build37)
Map Location 13,423,326 - 13,423,830
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
Downstream geneParn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173G09.T7 (MSMg01no173_g09.b1)MSMg01-173G09.TJ (MSMg01no173_g09.g1)
ACCAG369016AG369017
length689725
length of high quality
(start - end)
310 (42 - 351)588 (128 - 715)
definitionCHROMAT_FILE: MSMg01no173_g09.b1 PHD_FILE: MSMg01no173_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:04 2005CHROMAT_FILE: MSMg01no173_g09.g1 PHD_FILE: MSMg01no173_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTTATATATATTAGATATTAGCCCTCTATTAGATGTAGAGTTGGTAAAG
ATCTTTTCCCAATCCGCTGATTGCTGTTTTGTCCTATTGACAGTGTCCTT
AGCCTTACAGAGGCTTTCCAGTTTTATGAGGGCCCATTTGTCAATTCTTG
ATCTTAGAATATAAGCGCTACAGTTTTTATCACAATTGCTTTGTAATATG
AGGTCAGGGATGTTCCAGAAGTTCTTTTATTGTTGAGAATAGTTTTCGCT
ATCCTGGGTTTTTTATCATTCCAGGTGAATTTGAGAATTGCTCTTTTTTT
TTCTATGACCAATCGACCCGCAATTTTGATGGGGATTGCATTGAATCTAT
AAGTTCTTTTGACAAGATGAACATTTTTACTATATTAGTCCTGCCAATCC
ACGAGCATGGGAGATCTTTCCATCTTCTGAGGTCTTCTCTGATTTCTTTC
TTCAGAGACTTGAAGTTTTGGTCATACAGATCTTTCTCTGGTTCGAGTCA
CACCAAGATACTTTATATTGTTTGTGACTATTGTGAAGGGTGCCGTTTCC
CTAATTTCTTTTCTTAGCCTGTTCATCCTTTGAGTATATGAAGGCTATTG
ATCTGTTTGAGTTTCTTTTATATCTGGCCATTTTGCTGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTCCTGTATTCTGGACAATAC
CTTGCTGTCAGATAAGCAGTTGACCGCGGCTTTCTCCCCACACTGTGGGC
TGTGTGTTCACAGTGCTGGTCGCTGCCCATGCAGGGCCCGAGCTTTTCAT
CTGGCAAGCAGTCTCACTTCCCAGTCTGTGCCACTCTTTTCGGTGCTGTT
GGAACCCTTGTGAGAACGTCCTTGCCTGTGCCTGGACTCAGCATGTTTTC
CCTATGAATTCTGTGGTATAGTCAAAGTTTCAGATTTTATTCTGATCAGA
TTTGATACTTGGAGAGAGAGGGGGCGGCCCGAGCTCCCTTCATTGGTGGC
TTTGTGGCTTCAGGTTGCTCTCTGGCTCCTCTGTTCTGATCCATGGTCTG
CATCTCTGTTTTGTCAGATGGCTCAGTGGTTTTGAAGTCAGGCCCTGCAA
TCCCTCCATATGGCTCTTACTCAATATGAATTTCAAGATTGTTTTCTGGA
ATCTTGAAGATTGCATGACTCTATAGCTCATTTTGTTAGTGCTTTAAAAA
AACAATATTAATTTTACATTTTTTACAATATTAATTTTCACAACTTATGA
ACATGAGATGTTTTTCCATTTTAGTATCTAGAGACATTTTTCTAGTCAGT
TTTTTTTTTTTTTAAATTGTAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_g09.g1 MSMg01no173_g09.g1 CHROMAT_FILE:
MSMg01no173_g09.g1 PHD_FILE: MSMg01no173_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:04 2005
         (588 letters)



>mm_chr16_13423238_13424225
          Length = 988

 Score =  915 bits (473), Expect = 0.0
 Identities = 497/505 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctttctccccacactgtgggctgtgtgttcacagtgctggtcgctgcccatgcagggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ggctttctccccacactgtgggctgtgtgttcacagtgctggtcgctgcccatgcagggc 534

                                                                       
Query: 61  ccgagcttttcatctggcaagcagtctcacttcccagtctgtgccactcttttcggtgct 120
           ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 533 ccgagcttttcatctggcaagcagtcttacttcccagtccgtgccactctttccggtgct 474

                                                                       
Query: 121 gttggaacccttgtgagaacgtccttgcctgtgcctggactcagcatgttttccctatga 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 473 gttggaacccttgtgagaacgtccttgcctgtgcctggactcggcatgttttccctatga 414

                                                                       
Query: 181 attctgtggtatagtcaaagtttcagattttattctgatcagatttgatacttggagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 attctgtggtatagtcaaagtttcagattttattctgatcagatttgatacttggagaga 354

                                                                       
Query: 241 gagggggcggcccgagctcccttcattggtggctttgtggcttcaggttgctctctggct 300
           ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 353 gagggggcggggcgagctcccttcattggtggctttgtggcttcaggttgttctctggct 294

                                                                       
Query: 301 cctctgttctgatccatggtctgcatctctgttttgtcagatggctcagtggttttgaag 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cctctgctctgatccatggtctgcatctctgttttgtcagatggctcagtggttttgaag 234

                                                                       
Query: 361 tcaggccctgcaatccctccatatggctcttactcaatatgaatttcaagattgttttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tcaggccctgcaatccctccatatggctcttactcaatatgaatttcaagattgttttct 174

                                                                       
Query: 421 ggaatcttgaagattgcatgactctatagctcattttgttagtgctttaaaaaaacaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ggaatcttgaagattgcatgactctatagctcattttgttagtgctttaaaaaaacaata 114

                                    
Query: 481 ttaattttacattttttacaatatt 505
           |||||||||||||||||||||||||
Sbjct: 113 ttaattttacattttttacaatatt 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)