BAC Information

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BAC

Clone NameMSMg01-178A06
Chromosome16 (Build37)
Map Location 7,933,043 - 7,933,577
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178A06.T7 (MSMg01no178_a06.b1)MSMg01-178A06.TJ (MSMg01no178_a06.g1)
ACCAG372233AG372234
length841711
length of high quality
(start - end)
239 (13 - 251)535 (76 - 610)
definitionCHROMAT_FILE: MSMg01no178_a06.b1 PHD_FILE: MSMg01no178_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:42 2005CHROMAT_FILE: MSMg01no178_a06.g1 PHD_FILE: MSMg01no178_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTGCCAGAGGATCCGCGGAATTCATTAGGTGTCACTTCAAATC
CTGTATTCCATAAAGTTGGGAAATATAAACAAGATGACAATTTTCCGAAT
TGATACCGCTTAAAAAAGTTAAATTAAGATCGGGTAAACCTTATAATAGA
TACAAAATCCCTAAGGAAATAGAAGCAGACATTAAAAGTCCCCCAACCAA
AAGAAGAGGAGGAGGAGAAGGAGAAGGAAGAGGAGGAAGAGGAGGAGGAA
GTTCTTTTTTCCTCCACCCACTTTCGATCGTCCCAATTTTTCTCCTCTTT
TTTTCTCCCCTCCTTTCCTTTTTGTCCTTATCTTATCCCGTGCTTGGTTT
TTCTCCTCCCCTGCTCCATTTCTAGATTGTCCCTTATTTTCCTCTTTTTC
CGTCTTTGTCCCCCCCCCGAATACCCTAAGAACTTATACTCTTATTGACC
GTCCTTGCCGCACTAGGCTATTTCTTCGGAATTTCATTCCTCTATATTCG
TCACATCCGCACGTACACTATCTGCCGCCTCTCTGTTACACGTGCATTCC
ACCTCCCTTATAACCATTTTTATCCACCTTTTACCTTACTCCCCCATGTT
GTACATTGCTCCCCACATTCAGTTCCACTTTCGTTCTTTGTTATTTTTAA
CCCCCTTCCCCATCCCCCCTTTTTTTCACGGTATTTTTATATAGTTTCCC
CTTTTTAAACGTCCTCTTTTATCCCACCTTTATTTTTCAACTCCCCTGTA
TCCCTATATAGTATTGTTGAATATCCCCCTTCCCATCACTCTCCACCCCC
TATACAATACAATCTATTGGATTTCATTCTCACTCCCTCTN
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGAAGAATTTAACATAGTCTGT
GTACTTAATGTGATTGGGCTAAAGTTACATTGACCTCAGAAAATGAAATC
CAAAACGTATAAAGTTTTCTAATAAACATTTTTGTATTTGTTGAACCAAA
GAATAATAAAAGTAATTAGAACAATCAGAGCTTGTGAATTAAATCTGACA
TTTAATTTCATTTTTATAGCAATGTACTTTTAATAATCTTGGCCAATGGA
CACACATACAAAAATATCTAAGAAAGCAAGTCCGTTACTGTTTCTTTATT
CCCTGACAAACACAGTATTTGGATAGGAGAGATTTGTCCCTACGGTGAGG
TAAGACTGAGGTATACACGCCCGAGGAACTTGTGGAACTGCTTAGCACAG
TTTCAGATTCATACTACATGGTCAATAGAAATTCTTTTTTTCTATTATAA
TCTCAGAAAATAAAAAAATAATTAAAAAAATCTTTGCTACCATAATTGCA
TGGTTATTGCAATACATACCATGGTTGGTAGTCATTTTGTGCACAGAAAT
TTGACTAGTACATTTGCATGGTAGAAAGGCGAAAAGTGCTATTAAATTGC
ATAGTCCTTGCCTCTGAGATACTTGCTTCCCATCTGTAAAAACCTGAATG
CCTATATGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_a06.g1 MSMg01no178_a06.g1 CHROMAT_FILE:
MSMg01no178_a06.g1 PHD_FILE: MSMg01no178_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:42 2005
         (535 letters)



>mm_chr16_7932947_7933881
          Length = 935

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagaagaatttaacatagtctgtgtacttaatgtgattgggctaaagttacattgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgtagaagaatttaacatagtctgtgtacttaatgtgattgggctaaagttacattgacc 572

                                                                       
Query: 61  tcagaaaatgaaatccaaaacgtataaagttttctaataaacatttttgtatttgttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tcagaaaatgaaatccaaaacgtataaagttttctaataaacatttttgtatttgttgaa 512

                                                                       
Query: 121 ccaaagaataataaaagtaattagaacaatcagagcttgtgaattaaatctgacatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ccaaagaataataaaagtaattagaacaatcagagcttgtgaattaaatctgacatttaa 452

                                                                       
Query: 181 tttcatttttatagcaatgtacttttaataatcttggccaatggacacacatacaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tttcatttttatagcaatgtacttttaataatcttggccaatggacacacatacaaaaat 392

                                                                       
Query: 241 atctaagaaagcaagtccgttactgtttctttattccctgacaaacacagtatttggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atctaagaaagcaagtccgttactgtttctttattccctgacaaacacagtatttggata 332

                                                                       
Query: 301 ggagagatttgtccctacggtgaggtaagactgaggtatacacgcccgaggaacttgtgg 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 331 ggagagatttgtccctacggtgaggtaagactgaggtatacatgcccgaggaacttgtgg 272

                                                                       
Query: 361 aactgcttagcacagtttcagattcatactacatggtcaatagaaattctttttttctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aactgcttagcacagtttcagattcatactacatggtcaatagaaattctttttttctat 212

                                                                       
Query: 421 tataatctcagaaaataaaaaaataattaaaaaaatctttgctaccataattgcatggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tataatctcagaaaataaaaaaataattaaaaaaatctttgctaccataattgcatggtt 152

                                                                  
Query: 481 attgcaatacataccatggttggtagtcattttgtgcacagaaatttgactagta 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 attgcaatacataccatggttggtagtcattttgtgcacagaaatttgactagta 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)