Query= MSMg01no178_i18.b1 MSMg01no178_i18.b1 CHROMAT_FILE:
MSMg01no178_i18.b1 PHD_FILE: MSMg01no178_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:22 2005
(577 letters)
>mm_chr16_52423855_52424831
Length = 977
Score = 971 bits (502), Expect = 0.0
Identities = 550/573 (95%), Gaps = 14/573 (2%)
Strand = Plus / Plus
Query: 5 gaattctatcaagctaacatgtttgaatgatgcctggcacacagttaatcggaaatatcc 64
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctatcaagcaaacatgtttgaatgatgcctgccacacagttaatcggaaatatcc 264
Query: 65 actgcatctgatattgctgttatctctcctcatccagttaaagtgatagactgctgctgt 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgcttctgatattgctgttatctctcctcatccagttaaagtgatagactgctgctgt 324
Query: 125 atctatggtatgtagctgctcctgatgtctctgcctctggtactagtttgctatgagcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atctatggtatgtagctgctcctgatgtctctgcctctggtactagtttgctatgagcat 384
Query: 185 tagtactatgatttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtactatgatttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 444
Query: 245 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcgtcgtcttcttc 304
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 445 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt----ttcttc 500
Query: 305 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 560
Query: 365 ttcttccccctcttcttcttcttcttcttcttcttcttcttcttctccttcttctgnaca 424
|||||| |||||||| |||||||||||||||||| |||||| ||||||| |||
Sbjct: 561 ttcttc------ttcttctt-ttcttcttcttcttcttcatcttct---tcttctgtaca 610
Query: 425 tgcctctatttattctctagatagtgtacttttttccaccaagcaagacacccaactgaa 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 611 tgcctctatttattctctagatagtgtactttcttccaccaagcaagacacccaactgaa 670
Query: 485 ctggaattttgaataccttgtggaattgtgagatgcctcctcaggattcccaattcctct 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ctggaattttgaataccttttggaattgtgagatgcctcctcaggattcccaattcctct 730
Query: 545 taattgtatagttcaactgggttcttcttgttc 577
|||||||||||||||||||| ||||||||||||
Sbjct: 731 taattgtatagttcaactggattcttcttgttc 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 516
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 3
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_i18.g1 MSMg01no178_i18.g1 CHROMAT_FILE:
MSMg01no178_i18.g1 PHD_FILE: MSMg01no178_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:22 2005
(288 letters)
>mm_chr16_52473608_52474294
Length = 687
Score = 511 bits (264), Expect = e-149
Identities = 282/288 (97%), Gaps = 3/288 (1%)
Strand = Plus / Minus
Query: 1 tttccctgtgccagcccctcctgtcttcctgaaagtctgctccttgttattttgacttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttccctgtgccagcccctcctgtcttcctgaaagtctgctccttgttattttgacttgt 427
Query: 61 gtgatttttattcctttatatttcttcagtttgccattcacacaggtgtctctaagtatt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtga-ttttattcctttatatttcttcagtttgccattcacacaggtgtctctaagtatt 368
Query: 121 atattttaagtattgccctttttaactttatgtaaatggagccataggcctggtttcttc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atattttaagtattgccctttttaactttatgtaaatggagccataggcctggtttcttt 308
Query: 181 tagaatatctgtgcaaattcagctttgttgattatcattgagatttcttttcaatttg-t 239
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct: 307 tagaatatctgtgcaaattcagctttgttgattatcactgagatttcttttcaa-ttgtt 249
Query: 240 agttatataatacacacacatacatgcacacaattcacttattctttt 287
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agctatataatacacacacatacatgcacacaattcacttattctttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
