Query= MSMg01no179_e01.b1 MSMg01no179_e01.b1 CHROMAT_FILE:
MSMg01no179_e01.b1 PHD_FILE: MSMg01no179_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:13 2005
(581 letters)
>mm_chr16_56377610_56378590
Length = 981
Score = 1077 bits (557), Expect = 0.0
Identities = 572/577 (99%)
Strand = Plus / Plus
Query: 5 gaattcaggcaactgcaaaatatggatagcagtgcctcttcagggagccagactccgttt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggcaactggaaaatatggatagcagtgcctcttcagggagccagactccgttt 264
Query: 65 cattttcaattgtccatacatccttgtctcctgcacgtgacactgcagtcctcagagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattttcaattgtccatacatccttgtctcctgcacgtgacactgcagtcctcagagaaa 324
Query: 125 acttggaatgaggttgggaactctagggaggcagatgtgaggaagtgtggagctggttgg 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 acttggaatgaggttgggaactctagggaggcagacgtgaggaagtgtggagctggttgg 384
Query: 185 tggatcactactgcagaagatgacctggtctcttgaagatgttccgttttgtaattctac 244
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 385 tggatcactactgcagaagatgacctggtctcctgaagatgttctgttttgtaattctac 444
Query: 245 tttcatctcccaagtttggggctgatgagacagctcagttggtagaagagcttgctatgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcatctcccaagtttggggctgatgagacagctcagttggtagaagagcttgctatgc 504
Query: 305 cagcttgaccatttgagctcaatctccagaacacacaacttaaggaaagaacaggctctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagcttgaccatttgagctcaatctccagaacacacaacttaaggaaagaacaggctctc 564
Query: 365 aaaagctgacttctgacctcaaagtgcacactgtggcattctctgatcccatctgccaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaagctgacttctgacctcaaagtgcacactgtggcattctctgatcccatctgccaca 624
Query: 425 tagctaataagagctttaagaagaaaacaagacctctgggtttctactcttgcatggatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagctaataagagctttaagaagaaaacaagacctctgggtttctactcttgcatggatg 684
Query: 485 gcctgctgatggtttgtaggttttatataatcatctaataatggctagtctgcattcagg 544
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 685 gcctgctgatggtttgtaggttttatataatcatctaataatggctagtctgtattcagg 744
Query: 545 ggttagagcaggtctggcgttactaactttttggcca 581
|||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggttagagcaggtctggcgttactaactttttggcca 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_e01.g1 MSMg01no179_e01.g1 CHROMAT_FILE:
MSMg01no179_e01.g1 PHD_FILE: MSMg01no179_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:13 2005
(589 letters)
>mm_chr16_56522974_56523964
Length = 991
Score = 1065 bits (551), Expect = 0.0
Identities = 582/593 (98%), Gaps = 5/593 (0%)
Strand = Plus / Minus
Query: 1 tctgaattatggtttcatagagctgtaattttggaaaacagacaaaagtaatatgtttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tctgaattatggtttcatagagctgtaattttggaaaacagacaaaagtaatatgtttga 555
Query: 61 taatttgggaatcaaatcagcctctcatttagtgtcttttagtccaaccaagccaatcag 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 taatttgggaaccaaatcagcctctcatttagtgtcttttagtccaaccaagccaatcag 495
Query: 121 agacttcgaggccaagaagaatatttcccagcatttaacaaaattctaagcacatacaaa 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agacttcaaggccaagaagaatatttcccagcatttaacaaaattctaagcacatacaaa 435
Query: 181 agttgaaaaacacttagaaaacttgcagatcatttgcaataaaaaaaaa--cactctgat 238
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 434 agttgaaaaacacttagaaaacttgcagatcatttgcaataaaaaaaaaaacactctgat 375
Query: 239 tttggttgttgttgttgtattctgttacaacagcataaaacaaagacttgggactccttc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttggttgttgttgttgtattctgttacaacagcataaaacaaagacttgggactccttc 315
Query: 299 cctttgactaagtttatttcaataagtattttaatgcacaataactccaatttgtttagg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctttgactaagtttatttcaataagtattttaatgcacaataactccaatttgtttagg 255
Query: 359 agataggatcttttgcaaaacagtccaacaaacactggcattcttttttttcaatttttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agataggatcttttgcaaaacagtccaacaaacactggcattcttttttttcaatttttt 195
Query: 419 ttt-agatattttcttcatttacatttcaaatgctatcccgaaagtcccctataccctcc 477
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 194 ttttagatattttcttcatttacatttcaaatgctatccggaaagtcccctataccctcc 135
Query: 478 ccctgccctgctctccta-tccacccactcccacttcttggccctggtgttcccctgtac 536
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct: 134 ccctgccctgctctcctactc-acccactcccacttcttggccctggcgttcccctgtac 76
Query: 537 tggggcatataaagtttgcaagacctaggggcctctcgccccaatgatggccg 589
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 75 tggggcatataaagtttgcaagacctaggggcctctcttcccaatgatggccg 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 991
Length adjustment: 10
Effective length of query: 579
Effective length of database: 981
Effective search space: 567999
Effective search space used: 567999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
