Query= MSMg01no180_p16.b1 MSMg01no180_p16.b1 CHROMAT_FILE:
MSMg01no180_p16.b1 PHD_FILE: MSMg01no180_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:21 2005
(367 letters)
>mm_chr16_11548610_11549376
Length = 767
Score = 638 bits (330), Expect = 0.0
Identities = 357/370 (96%), Gaps = 8/370 (2%)
Strand = Plus / Minus
Query: 2 tataaaacataagcatctaattttaaagtagcaca----tcccctaaatgtcccaagcac 57
||||||||||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct: 659 tataaaacataagtatctaattttaaagtagcacattttt----taaatgtcccaagcac 604
Query: 58 aatagcatccacctgtaatcccaacacttagtaggacaaaggagaatgttgagttcatga 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aatagcatccacctgtaatcccaacacttagtaggacaaaggagaatgttgagttcatga 544
Query: 118 ctagtctgtgctacataacaagatatgtcataaaataaaactaaataaaaaactaattaa 177
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctagtctatgctacataacaagatatgtcataaaataaaactaaataaaaaactaattaa 484
Query: 178 tattagaataactggggttgaatattcaactctaaaacccaagagaacaagcaaaacagt 237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tattggaataactggggttgaatattcaactctaaaacccaagagaacaagcaaaacagt 424
Query: 238 tgatatatttagaaaaagaggaataaaaataaatatacagtttaattattaagaattgaa 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 423 tgatatatttagaaaaagaggaataaaaacaaatatacagtttaattattaagaattgaa 364
Query: 298 gcttctggtttctgtctgttcctggagcaggtcctctgccacagggctccagaaccaggt 357
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 363 gcttctggtttctgtctgttcctggagcaggtcctctgccactgggctccagaaccaggt 304
Query: 358 ggctctggaa 367
||||||||||
Sbjct: 303 ggctctggaa 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_p16.g1 MSMg01no180_p16.g1 CHROMAT_FILE:
MSMg01no180_p16.g1 PHD_FILE: MSMg01no180_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:21 2005
(234 letters)
>mm_chr16_11375088_11375721
Length = 634
Score = 414 bits (214), Expect = e-120
Identities = 229/234 (97%)
Strand = Plus / Plus
Query: 1 aggtccttctttcctcatacccagtaaccaaccctgggaagcctttatccggcagggagg 60
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 201 aggtccttctttcctcatacccagtaaccaaccctggaaagcctttatctggcagggagg 260
Query: 61 aggggttccccatcgctacagagatgagcccccatttctagttttcctcaccaatatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 261 aggggttccccatcgctacagagatgagcccccatttctagttttcctcaccaatgtgct 320
Query: 121 gtagcctctccacatgtaattaaggcagaatagcaaaggacaggtagggagaggctgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagcctctccacatgtaattaaggcagaatagcaaaggacaggtagggagaggctgaag 380
Query: 181 actcaggtgagaggcgctgaccctcccaccgctccgtgaggggatgtaacagtc 234
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 actcaggtgagaggcgctgaccctcccaccgctctgtgaggggatgtaacagtc 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
