BAC Information

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BAC

Clone NameMSMg01-181K04
Chromosome16 (Build37)
Map Location 75,139,295 - 75,139,598
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181K04.T7 (MSMg01no181_k04.b1)MSMg01-181K04.TJ (MSMg01no181_k04.g1)
ACCAG374752AG374753
length760714
length of high quality
(start - end)
327 (46 - 372)275 (434 - 708)
definitionCHROMAT_FILE: MSMg01no181_k04.b1 PHD_FILE: MSMg01no181_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:08 2005CHROMAT_FILE: MSMg01no181_k04.g1 PHD_FILE: MSMg01no181_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGCATTTCCTTAGGAGAGCCTATTTTAATCATGTCATCTGTTG
TGCCAAATATTGGCTGTATAGCTCAAAACTAGTATGATTTAGGTAGTTTT
GTGATGCAAATAGCCCTGGGGCTAATTGTATTTGATGTTAATTCCATTCT
TCTGTGAGGGGCTGTGAACAAGGAATGAGTCAGCACTTGGGTGATTTCCT
GTAAACCCTCTCCCACCATAATTTATAAATAAAGGCTAGATTGGGCAGAG
AAAGAGGGGAAGGTGGAGCTGAAGGTTTTGGGAGAGAAAGAGAGAGAGAG
AGAGAGAGAGAGGATGATGGAGGCCCCCCCCCCCTTCTTTTCTTCCTTTT
TTTTTTTCTTTTTTTTTTTCTTATTTAATATAAATAATTTTTCTTTGGTC
GGATCTTTTCCTATCTATTCCCTTTTTTCTTTTTTTTCTCCCTCCTTTTC
CTTTTTCTTTTCCTCCTATTCCCTCTCTATCTTCTTTTCATCTCTATATC
TGACTATTCCCTTTCCCATTCCATATCATCTTCTTTCCTTTTTACTCCAT
CCTCTTTTCCTATATTTTCCATCTCGCCTCCGTTTCTTTCTTTTTATTCT
TTCCCCTATCTTGCTTTTCCTTTTATTTTTACCCTTTCCTTTCCCTACTT
TCTTTTGCCGCTTCTATTTTTTCCCTATTTTTCCCCCTTTTTATTCCTCC
CTCTTCTCTG
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAATTGTTCACCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGTGGTTCCTCATATTTTTGGACATAGTACTACCGGAGGATCCAG
CAATACTTCNCTGGGTTCACCTATCCGAACACGCCCCAATTGGTAAGAAG
GACACATGCTCCACTATGTTCAAAACAAAAAAATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTA
AACACATGAAACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_k04.b1 MSMg01no181_k04.b1 CHROMAT_FILE:
MSMg01no181_k04.b1 PHD_FILE: MSMg01no181_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:08 2005
         (327 letters)



>mm_chr16_75139293_75140019
          Length = 727

 Score =  543 bits (281), Expect = e-159
 Identities = 299/305 (98%), Gaps = 1/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgcatttccttaggagagcctattttaatcatgtcatctgttgtgccaaata 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaattcgttgcatttccttaggagagcctattttaatcatgtcatctgttgtgccaaata 247

                                                                       
Query: 65  ttggctgtatagctcaaaactagtatgatttaggtagttttgtgatgcaaatagccctgg 124
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 246 ttggctgtatagcttaaaactagtatggtttaggtagttttgtgatgcaaatagccctgg 187

                                                                       
Query: 125 ggctaattgtatttgatgttaattccattcttctgtgaggggctgtgaacaaggaatgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggctaattgtatttgatgttaattccattcttctgtgaggggctgtgaacaaggaatgag 127

                                                                       
Query: 185 tcagcacttgggtgatttcctgtaaaccctctcccaccataatttataaataaaggctag 244
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 126 tcagcacttgggtgatttcctgtaaaccctctccca-cttaatttataaataaaggctag 68

                                                                       
Query: 245 attgggcagagaaagaggggaaggtggagctgaaggttttgggagagaaagagagagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 67  attgggcagagaaagaggggaaggtggagctgaaggttttgggagagaaagggagagaga 8

                
Query: 305 gagag 309
           |||||
Sbjct: 7   gagag 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)