Query= MSMg01no183_b08.b1 MSMg01no183_b08.b1 CHROMAT_FILE:
MSMg01no183_b08.b1 PHD_FILE: MSMg01no183_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:00 2005
(644 letters)
>mm_chr16_4576045_4577088
Length = 1044
Score = 1017 bits (526), Expect = 0.0
Identities = 570/586 (97%), Gaps = 7/586 (1%)
Strand = Plus / Plus
Query: 6 aattccaggaggtgctgtttccagggcaggaaacagcagcaaacagaaacgcccattatt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattccaggaggtgctgtttccagggcaggaaacagcagcaaacagaaacgcccattatt 265
Query: 66 ttatatgctaattaaaacaagacttagaggaggcctttgctcctacaggatttagacagg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttatatgctaattaaaacaagacttagaggaggcctttgctcctacaggatttagacagg 325
Query: 126 gcatctaagaggctctgcttgggcactgagtctcctctttggagaagtcagggccagcct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcatctaagaggctctgcttgggcactgagtctcctctttggagaagtcagggccagcct 385
Query: 186 cctgatcctgacccaccaacagcctccaggtgtccggagggaaggcagagatcacctgaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cctgatcctgacccaccaacagcctccaggtgtccggagggaaggcagagatcacctgaa 445
Query: 246 tgctgatttagtgaccctcataatatatactgtagctgtcttcagacacaccagaagagg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgctgatttagtgaccctcataatatatactgtagctgtcttcagacacaccagaagagg 505
Query: 306 gcatcagatcccattacagatggttgtgagccaccatgtggttcctgggaattgaactca 365
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 506 gcatcagatcccattgcagatggttgtgagccgccatgtggttcctgggaattgaactca 565
Query: 366 gtgctcttatccgttgagccatctctccagcctcccttctgctctatttttttt-aaaga 424
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 566 gtgctcttatccattgagccatctctccagcctcccttctgctctatttttttttaaaga 625
Query: 425 tttatttatttattatatgtaagtacactgtagctgtcctcagacaccccagaagagggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttatttatttattatatgtaagtacactgtagctgtcctcagacaccccagaagagggc 685
Query: 485 atcagattttgttacggatggttgtgagccaccatgtggttgctgggatttgaactcggg 544
||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct: 686 atcagattttgttacagatggttgtgagccaccatgtagttgctgggaattgaactcagg 745
Query: 545 acc-ttcggaagagcagtcactg--ctcttaaccactgagccatct 587
||| || |||||||||| || | |||||| ||||||||||||||
Sbjct: 746 accctt-ggaagagcagcca--ggactcttagccactgagccatct 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_b08.g1 MSMg01no183_b08.g1 CHROMAT_FILE:
MSMg01no183_b08.g1 PHD_FILE: MSMg01no183_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:00 2005
(587 letters)
>mm_chr16_4701813_4702799
Length = 987
Score = 1073 bits (555), Expect = 0.0
Identities = 579/587 (98%)
Strand = Plus / Minus
Query: 1 ttggaggtaattgcccaaagtcacagggcaagtggcagaaccaaggctagaactcaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ttggaggtaattgcccaaagtcacagggcaagtggcagaaccaaggctagaactcaggaa 716
Query: 61 acaacttttaggcacagctgccgggcagcaagtgctcctgggctttcttaaatacatgga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 715 acaacttttaggcacagctgccgggcagcaagtgctcctgggctttcttaaatatatgga 656
Query: 121 tgcagtgaacaggagacgcacccatgagagatggctgtatacccacgagtcccctcttcc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgcagtgaataggagacgcacccatgagagatggctgtatacccacgagtcccctcttcc 596
Query: 181 aatgacttttgggggcctatgaaaactcaagttctgaaatgtctgtcaatagagacttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 595 aatgacttttgggggcctatgaaaactcaagttctgaaatgtctgtcaatagagactcag 536
Query: 241 aggcccctcacaccgccatgtcagtcccaggtcccttaccagtgcttgtgtgggtgactc 300
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 aggtccctcacaccgccatgtcagtcccaggtaccttaccagtgcttgtgtgggtgactc 476
Query: 301 cattaaccgtcccctccacgtcagtctcatcctcggcatagctcaggatcaggttctgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cattaaccgtcccctccacgtcagtctcatcctcggcatagctcaggatcaggttctgct 416
Query: 361 gcctactgctcagcctcctgcggaccaacaacagttagtggccgagcacttcctccaggc 420
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 415 gcctactgctcagcctcctgtgaaccaacaacagttagtggccgagcacttcctccaggc 356
Query: 421 ggcccttgaaagcacataagcacatacatgtctgactcgcgcagaggcacgcactgagcc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agcccttgaaagcacataagcacatacatgtctgactcgcgcagaggcacgcactgagcc 296
Query: 481 agtggtgaggaactgatggccaagtcaacgtttcagaaaagggctctagccagcctacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agtggtgaggaactgatggccaagtcaacgtttcagaaaagggctctagccagcctacac 236
Query: 541 atggcaagtgtggctctggcaggccttacccttcactattctctctt 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 atggcaagtgtggctctggcaggccttacccttcactattctctctt 189
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
