BAC Information

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BAC

Clone NameMSMg01-185A15
Chromosome16 (Build37)
Map Location 42,202,912 - 42,203,190
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667450, Lsamp
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185A15.T7 (MSMg01no185_a15.b1)MSMg01-185A15.TJ (MSMg01no185_a15.g1)
ACCAG377148AG377149
length701703
length of high quality
(start - end)
203 (418 - 620)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no185_a15.b1 PHD_FILE: MSMg01no185_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:39 2005CHROMAT_FILE: MSMg01no185_a15.g1 PHD_FILE: MSMg01no185_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTTCGCTGTCCTTGATAACCTGTAAGTATGCTTTCAGTGCTATA
ACCTCATTTAATTATCTGCTGGTCTAAAAGCATTTTCGCATAGATTTCGA
ACCTTTGTCCTTATGGCCTATTGAAGACAGAATTCTACCCCACTTGGCCC
TTTAGGAAGCTGAAAATAGTGCTTAAACTACTGAATTCCCTCCGGCCTTC
TACAATATCAGACCTTGGCCCATCACACTCAGTCTTATACACACGAGCTC
TATGTGCGCCGCTCATTCCTCAGTAGCCACAAGTAGCACAATAAAATTTC
CCTTTACAACAATGGAGACAGCATCTTCTCATCTTTAGACATCCATTTCC
CACAATCTCTCATATGCATCTTCCATGAAAATTCAGAGCACTATTTTACA
TCTTTTCTTTTTTGATTAATTTATTTAAAAATTTATGAATATATTTGATC
AAATCCTTTCCCCATTCCCAAATTGTCTAAGATTTGTTCTTACCCACCCA
ACTCCTATTTATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTTTCTCTCACGCAAAACAAAATGATAGTGATTAATACACA
GATCGACAACTACTGCATCTTTCTAATGAATTCTATGATGTGCTGTAATT
C
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGAAGGTAGATAAAATACAAA
GACTATGAATCTTTTCCCTTTAATATTGCAGTCAAGGTCCAGGATGTTGT
GGTTGCAGACCTGGGAGACAGCCTGTCTTTTATGTGGAGATGAGATGGAG
GTAGACAACATACCTTCCCAGAGTTAACATTTTCATGAAGTGAAATAATA
AGTAAATAAAAGCATTAGTACTTCAGAAAAAGTCAAATTATGAAATAAAA
CAGACTTATCTGCTAGTGAGAAAACAGTCAAGATGGAGGCTTTAACTATA
GTGTTTATTCTAACACTCCTTGGGGAATTCATACATATGTTATACTGTAC
TTTGCAGGGAAGTGTAAATGTTAAGGAGAAGAAATGTAATGAAATTGAGA
ATTTTATTAAGTAGATACTTTTTGTATGAAAATTATCCAAAGAAGCTAAA
TGTATCAGGAGCTTGACTTGCCTCTTTTCTAATAAAGCAGAGGAAAAATG
GGGAATTTGGGGACATTGTGTTCCCTAGCCTTTCTGGCCTTTCAGTACAA
AGAGGAAAAGATGGCCCTGAGGTGACTTGCAACAGGGAAGTGAGTAGTTC
AAACGAGTGATCATGAAATAGGGAAAGTGGAGCAGGGTGGCAAGAGGGAG
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_a15.g1 MSMg01no185_a15.g1 CHROMAT_FILE:
MSMg01no185_a15.g1 PHD_FILE: MSMg01no185_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:39 2005
         (278 letters)



>mm_chr16_42202712_42203390
          Length = 679

 Score =  470 bits (243), Expect = e-137
 Identities = 270/279 (96%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaggaaggtagataaaatacaaagactatgaatcttttccctttaatattgcagtcaag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 479 taaggaaggtagataaaatacaaagactatgaatctttcccctttaatactgcagtcaag 420

                                                                       
Query: 61  gtccaggatgttgtggttgcagacctgggagacagcctgtcttttatgtggagatgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtccaggatgttgtggttgcagacctgggagacagcctgtcttttatgtggagatgagat 360

                                                                       
Query: 121 ggaggtagacaacataccttcccagagttaacattttcatgaagtgaaataataagtaaa 180
           ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 359 ggaggcagacaacataccttcccagagtttacattttcatgaagggaaataataagtaaa 300

                                                                       
Query: 181 taaaagcattagtacttcagaaaaagtcaaattatgaaataaaacagacttatctgctag 240
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 299 taaaagcattagtacttcagaaaaagtcaaattatgaaataagatagacttatctgctag 240

                                                  
Query: 241 tgagaaaa-cagtcaagatggaggctttaactatagtgt 278
           ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 239 tgaaaaaaacagtcaagatggaggctttaactatagtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 679
Length adjustment: 9
Effective length of query: 269
Effective length of database: 670
Effective search space:   180230
Effective search space used:   180230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)