Query= MSMg01no186_i01.b1 MSMg01no186_i01.b1 CHROMAT_FILE:
MSMg01no186_i01.b1 PHD_FILE: MSMg01no186_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:30 2005
(609 letters)
>mm_chr16_62794555_62795562
Length = 1008
Score = 1123 bits (581), Expect = 0.0
Identities = 599/605 (99%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 5 gaattctctccttgggtaccactctcaaatcatgtaatttggtagattaaagatctgaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctccttgggtaccactctcaaatcatgtaatttggtagattaaagatctgaga 264
Query: 65 atttgctttttaaaatagtaactgttttaaaattacatcaagatggagtgtacattttag 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttgctttttaaaatagtaactattttaaaattacatcaagatggagtgtacattttag 324
Query: 125 aaacaatgttatcacaaagcatacatgcttgtacacttcaagtgtgtacagtaaatcaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacaatgttatcacaaagcatacatgcttgtacacttcaagtgtgtacagtaaatcaac 384
Query: 185 tttctatccagacagtttaaacagagcatctgtagaaagtggcgtagtcaatacaatagc 244
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 385 tttctatccagacagtttaaacagagcatctgtagaaagag-cgtagtcaatacaatagc 443
Query: 245 aaacttaaacaaaaggtttagaaaaaaatataaaaatagttaaaatttagattataattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaacttaaacaaaaggtttagaaaaaaatataaaaatagttaaaatttagattataattt 503
Query: 305 cccaggaattcccctttcatgtacatataccttataaaacatgtttaatgcatagaaata 364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 cccaggaattcccctttcatgtacatatatcttataaaacatgtttaatgcatagaaata 563
Query: 365 cagattattaaataatcaggtatgtagagtccattggctcaacttgtgaggtttttcttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagattattaaataatcaggtatgtagagtccattggctcaacttgtgaggtttttcttc 623
Query: 425 aggagtatgtccaaaagttgggatgtgtaaaccagagcatcgatgccatgactgcttacg 484
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggagtatgtccaaaagtcgggatgtgtaaaccagagcatcgatgccatgactgcttacg 683
Query: 485 tggccagatgctcttttcagctactggtcattttgtttcctttctgctttaaccacagaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tggccagatgctcttttcagctactggtcattttgtttcctttctgctttaaccacagaa 743
Query: 545 gatggagaagtaaattatcaggtcaagttcttggatattctttcttccctgaaatcatta 604
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gatggagaagtacattatcaggtcaagttcttggatattctttcttccctgaaatcatta 803
Query: 605 tggtt 609
|||||
Sbjct: 804 tggtt 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space: 597802
Effective search space used: 597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_i01.g1 MSMg01no186_i01.g1 CHROMAT_FILE:
MSMg01no186_i01.g1 PHD_FILE: MSMg01no186_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:30 2005
(506 letters)
>mm_chr16_62963708_62964613
Length = 906
Score = 901 bits (466), Expect = 0.0
Identities = 496/506 (98%)
Strand = Plus / Minus
Query: 1 agttttatgaggctgcaaaaatacctcgggagcttctctgtggcgctggctgttttactg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 706 agttttatgaggctgcaaaaatacctcaggagcttctctgtggcgctggctgttttactg 647
Query: 61 cgcaccttccccaggaaggaggtgtcagttcttccctgctaactgcctcataacacatcc 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cccaccttccccaggaaggaggtgtcagttcttccctgctaactgcctcataacacatcc 587
Query: 121 cattaaaagagcaaaaaaccagtgggaggaatgccagcagtttatatttgttctgttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cattaaaagagcaaaaaaccagtgggaggaatgccagcagtttatatttgttctgttctc 527
Query: 181 ggcaaatatctctcgtttgaaaagtgaaaagaatagcccgtggattttatttatagtaat 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggcaaatatctcttgtttgaaaagtgaaaagaatagcccgtggattttatttatagtaat 467
Query: 241 aaaattgaattctaaaccgagctttctccaacctccactccatgagctagcatctgaaac 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 466 aaaattgaattctaaaccgagctttctccaacctccactccatgtgctagcatctgaaac 407
Query: 301 tcgcaagcctctgacaagtccaaatggctgctacctcaggcccttcacagttcagcctac 360
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcgaaagtctctgacaagtccaaatggctgctacctcaggcccttcacagttcagcctac 347
Query: 361 agttcttcgaaaggaaaaaaaaaaaagatccttgaaaagctagtttttatcaaacaatgt 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 346 agttcttagaaaggaaaaaaaaaaaagatccttgaaaagctagtttttatcaaacgatgt 287
Query: 421 ttcccatctccttcatatgcacgattcacacaaatttaatatgtgttattttgatgaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 286 ttcccatctccttcatatgcacgattcacacaaatttaatatgtgttatttcgatgaaga 227
Query: 481 aagcataaaattacaatatgctcctt 506
||||||||||||| ||||||||||||
Sbjct: 226 aagcataaaattagaatatgctcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
