BAC Information

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BAC

Clone NameMSMg01-193N19
Chromosome16 (Build37)
Map Location 39,697,121 - 39,697,372
singlet/doubletsinglet
Overlap genenone
Upstream geneCdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193N19.T7 (MSMg01no193_n19.b1)MSMg01-193N19.TJ (MSMg01no193_n19.g1)
ACCAG382994AG382995
length788756
length of high quality
(start - end)
322 (45 - 366)252 (77 - 328)
definitionCHROMAT_FILE: MSMg01no193_n19.b1 PHD_FILE: MSMg01no193_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:32 2005CHROMAT_FILE: MSMg01no193_n19.g1 PHD_FILE: MSMg01no193_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTGTGTAAATGAGCCACATGTTCTGTATCCATTCTTCAGTTGAA
GGACATCTGGGCCATTTCCAGCTTCTCGCTATTACAAATAAGTTGCTATG
AACATACTGGAACATGTGCCCTTGTGGCATGGTGGGGCAACTTTTTGGTA
TATGCCAGAGATGTATTTCCAGTTTTCAGAGGAACAGCTAGATTGATTCC
CAGAGTTGTTGTACAGTTTGCAATCCCACCAGAAATTGTGGAATTTCCCT
ATATTTTTTATTGCATATGCTGTCACTTGAGATTTTGTTCTTAGCCATTC
TGATTGGTGTAAAGTGTATATCTCAGGCTCACTCGCATTTGCTTTTCCCT
GATGACTAGGAACTTTGAACACCACTTGAAGAGATTCTTGGCCTATCAAG
ATTTTTCTGTTAGGAAAGCTATGTTTAGCTCTGTACTCCATTTTAATTGG
GTAATTTGGCATTTGTGTTCCCAATTTTCCTTTTTCCCCATATATCTTTA
TCATCCCCTCTACCTTTCCCTCTTTCCTCCCCTTTCCCCTTCTTTTTCCC
CCCTCCTCCCCCCCTCTTTTCCTTTTCTCCTTTTCCTTCCGTTTCCCTTA
TTCCCCCCCTTTTCCCCTTTTCTTTCCTTTCCCTCTCCTTTCTCTTCTTT
TCTCCCCCCCCTTCCCTTTCTTTTTTTCTCTTTCCTTTTATCCCCCTCTT
TTCTCCCCTCCTTTTTTCGCCCCCTTCTCTTCTTCTTT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTCAGTTTCTGAGAAGGAGCTT
TGCATAGAGACATACAAAGAAACTTCTTCTACCTTATGAATGGATGTTTA
CTAGTGTTTATATTTTGGAATGCATTAAAGATCGAGGAGAGCCTACATCC
CAAACTAAACAGGAGCATGCATGAATGTAGACATGTGTATACACACATAG
GTACACACACACAGGTATACACACACACACACAGATACACACACATAGGT
ATACGCACACACACACACACACACACACACTTACACACACACACACACAC
ACACACACATACACACAAGGTTTTTTTCCATCCCTCCCACCTATGATACT
CTGAGCAGATTTTAATTTCCTTTCCACAAAATGGAGGCTACTATTTCCCT
TTTAGAGTTACAATGGGCAAGAGGCACACATCTCTAGCTCCCGAAGTGCC
TCACTCAAATTCCTTTTACAAATAGCAGTGGTTTTCCTACTGACATGAGT
TTAAAAGCCTTTCAATTGAAATCGTTGAAGTGACAAGATATACGGGTACA
TTCATCTTAAAGCTTGGGAAACACACAGGGGAATGAGTGTCTGTGAGAAT
CAGGAAGCAGCCATGAAAATCCTTATATTGAGCTAAATATGCAAATGTGG
TGAGTTGACTCAATTTTAATTTACTTACCAGAGAAGCTAATTAGCATAAT
GGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_n19.g1 MSMg01no193_n19.g1 CHROMAT_FILE:
MSMg01no193_n19.g1 PHD_FILE: MSMg01no193_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:32 2005
         (252 letters)



>mm_chr16_39696921_39697572
          Length = 652

 Score =  480 bits (248), Expect = e-140
 Identities = 251/252 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattcagtttctgagaaggagctttgcatagagacatacaaagaaacttcttctacctta 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tattcagtttctgagaaggagctttgcacagagacatacaaagaaacttcttctacctta 260

                                                                       
Query: 61  tgaatggatgtttactagtgtttatattttggaatgcattaaagatcgaggagagcctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatggatgtttactagtgtttatattttggaatgcattaaagatcgaggagagcctac 320

                                                                       
Query: 121 atcccaaactaaacaggagcatgcatgaatgtagacatgtgtatacacacataggtacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcccaaactaaacaggagcatgcatgaatgtagacatgtgtatacacacataggtacac 380

                                                                       
Query: 181 acacacaggtatacacacacacacacagatacacacacataggtatacgcacacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacaggtatacacacacacacacagatacacacacataggtatacgcacacacacac 440

                       
Query: 241 acacacacacac 252
           ||||||||||||
Sbjct: 441 acacacacacac 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)