BAC Information

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BAC

Clone NameMSMg01-194P09
Chromosome16 (Build37)
Map Location 18,088,057 - 18,088,657
singlet/doubletsinglet
Overlap geneProdh
Upstream genePpil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6
Downstream geneRtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194P09.T7 (MSMg01no194_p09.b1)MSMg01-194P09.TJ (MSMg01no194_p09.g1)
ACCAG383678AG383679
length734760
length of high quality
(start - end)		607 (46 - 652)39 (484 - 522)
definitionCHROMAT_FILE: MSMg01no194_p09.b1 PHD_FILE: MSMg01no194_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:00 2005CHROMAT_FILE: MSMg01no194_p09.g1 PHD_FILE: MSMg01no194_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAAGTGTCGCCACTAGGAGCGGAGTGGCCAAACACAGCTGCTC
CGAACAGTTTTGGGAAGTGAGGAGACAAACTCCCAACTTCGTTTTCTCCT
GCGTTTACATTTGTTATAAATACAGCCGAAGAGCCTGGATTCAGAAACTT
CTGATCCAAGTGCTCTCTCTGATTACAGGCATGAGAGCAAGTCAACTCCA
CCTGTGGTCCAGACAGCACCATAGTCTATGTCTATGTCTGCCTGCTGCCA
GCATAAACATCCAGCGAGGTTCTCAGAGACTAGCAAGCATACAACTTTAA
ACTGTAACATGGCAACTTGAGGGCGTTTGGGCGAAACAGAGCACCACTTC
AACCTGTCTTGAGGGGTTAGTGATGAGTTATCTCAAGGTGACCTTCCATG
TTTGTGAGGATACAGATCTGGAAGATATCTCAGTGAGGATGGTGACTTCT
CAGGTGAGGCTGCCGGAGCTGGATCCACACTTAGAATTTAGCTGAGGCCA
CACTCAGAACCATGTTGAGGTGGACTTGAGGCTCTGGCCTGTATCCCCTG
AAGAACTTCATTGTAAGCTTTGGAGTCTGGGAGTGGTGGGTGGTAGGAGA
AAGCCTGTTACCTGAGTGTGTTAGGCCCATGATTCCTGGTACGTTTGTGT
TCAGTATGTGTGCTTTTATTTGCATCTAATTTCG

AAAAAGGGAANAANAAAAAACACCCCCNCCCCCCCNNCNNNNNCCGAAGA
TATGGGTAGCCTGGNGGCGCCGTTTCCAAGNGNAGGNGAANNANAGAATT
TTCAAAAGAGGGNNNAAAGAANNNNNAAGGGAAAAGGAGAGGNNGGAGTG
TTCCGCNAAAAAGAGAGGGAGGAAAANANGNGAGNAGNNNNNNAGAAANA
NGAAAANAANNANNNNNAANGGNNNNAANNAAAAGNAGNNAAGNANNAAA
NNNNNNAGAAANANAAANANANANAGAAAAGTTTTTTNNNGANTAATGAG
ATGTNANATGTANAAAAGAAAGTANAGTGGTATNTNNAGAAGNAGTTTTT
TTTTTTGNNAGANNNNAGAANANGGGANNAGNANGGATTTTTTTTGCCCC
CGCCCCACCCATTCACAGAGGCTTGTCCCTACCCCAGGCTCTGGTGCCTA
AAAAAAAATGAACAAAGAGTGGGGGGAGAGGTACACCAACATGCACACAT
ATATGTGTAAATACAGATCCATTTATGTGGGCATGCTAGGAGATATGTTA
TGTTCAGAAGTTCAGAGAGTATATCTCCATCTCCTATTTCAGCACAGGCC
CAAATTTATACCAGACAGGGTTAGAATTGTTTGTTTACATGGCATAGAAA
GCAATACACATTGTGGAGACAATACTTTGAGTTTTTATTTTTTTTGTTTA
TATGGAGAGGTCTGAAGATCTTTAAGTGTAAAATATTGGGAATTGCAACT
CTTAGATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_p09.b1 MSMg01no194_p09.b1 CHROMAT_FILE:
MSMg01no194_p09.b1 PHD_FILE: MSMg01no194_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:00 2005
         (607 letters)



>mm_chr16_18087853_18088857
          Length = 1005

 Score = 1116 bits (577), Expect = 0.0
 Identities = 596/603 (98%), Gaps = 2/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacaagtgtcgccactaggagcggagtggccaaacacagctgctccgaacagtt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattccacaagtgtggccactaggagcggagtggccaaacacagctgctccgaacagtt 746

                                                                       
Query: 65  ttgggaagtgaggagacaaactcccaacttcgttttctcctgcgtttacatttgttataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 745 ttgggaagtgaggagacaaactcccaacttcgttttctcctgcgtttacatttattataa 686

                                                                       
Query: 125 atacagccgaagagcctggattcagaaacttctgatccaagtgctctctctgattacagg 184
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 685 atacagccgaagagcctggattcagaaacttctgatccaagtg--ctctctgattacagg 628

                                                                       
Query: 185 catgagagcaagtcaactccacctgtggtccagacagcaccatagtctatgtctatgtct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 catgagagcaagtcaactccacctgtggtccagacagcaccatagtctatgtctatgtct 568

                                                                       
Query: 245 gcctgctgccagcataaacatccagcgaggttctcagagactagcaagcatacaacttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcctgctgccagcataaacatccagcgaggttctcagagactagcaagcatacaacttta 508

                                                                       
Query: 305 aactgtaacatggcaacttgagggcgtttgggcgaaacagagcaccacttcaacctgtct 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 507 aactgtaacatggcaacttgagggcgtttgggcaaaacagagcaccacttcaacctgtct 448

                                                                       
Query: 365 tgaggggttagtgatgagttatctcaaggtgaccttccatgtttgtgaggatacagatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgaggggttagtgatgagttatctcaaggtgaccttccatgtttgtgaggatacagatct 388

                                                                       
Query: 425 ggaagatatctcagtgaggatggtgacttctcaggtgaggctgccggagctggatccaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggaagatatctcagtgaggatggtgacttctcaggtgaggctgccggagctggatccaca 328

                                                                       
Query: 485 cttagaatttagctgaggccacactcagaaccatgttgaggtggacttgaggctctggcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cttagaatttagctgaggccacactcagaaccatgttgaggtggacttgaggctctggcc 268

                                                                       
Query: 545 tgtatcccctgaagaacttcattgtaagctttggagtctgggagtggtgggtggtaggag 604
           |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 267 tgtatcccttgaagaacttcattgtaagctttggagtctgggagtgatgggtggtaggag 208

              
Query: 605 aaa 607
           |||
Sbjct: 207 aaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1005
Length adjustment: 10
Effective length of query: 597
Effective length of database: 995
Effective search space:   594015
Effective search space used:   594015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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