BAC Information

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BAC

Clone NameMSMg01-194P20
Chromosome16 (Build37)
Map Location 35,887,278 - 35,887,803
singlet/doubletsinglet
Overlap genenone
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14
Downstream geneLOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194P20.T7 (MSMg01no194_p20.b1)MSMg01-194P20.TJ (MSMg01no194_p20.g1)
ACCAG383696AG383697
length710718
length of high quality
(start - end)
530 (45 - 574)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no194_p20.b1 PHD_FILE: MSMg01no194_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:03 2005CHROMAT_FILE: MSMg01no194_p20.g1 PHD_FILE: MSMg01no194_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGAAACTGGCTGGAGTCTGAAAATGGAAGCAGGCAGCCACCAAGA
GTAGGACAGAACCATCAAAACCCCCTGGAGTCAAGGGCCAGAATTCTAGT
CATGTGCAGTATTCTGCTGAAATTCCCATAGAGATACCAAAATCAACGGA
GACTGAGCTTTGCCAGAACCATGACCCAGCCCCACTTGGCACAACCTACT
ATAGAGTTGAGAATAAAATGCTTTATGAAATAATGTAATTTTCAGTTTTG
TATGGAAAAATAAATGGTAGAGAGTAGCGAAAGATTACTCTAGGTCCAAA
GGGATTATGAATAGAATTTAGAGTTGTAGAAATATGTAGAAATATTCATA
ATATATTATAAGTCCACACCTCCCACCAATCTCTGAAAAACAAATTCCAG
GTAGAGTGAGAATTAAATACCTTACAAATAAAAAACAAATATATGCACCC
ACATAGGAAAGGCTAACAGTTCCGGAAATCTCCTTTTGATTACTGATAGA
AAACAAACTTCAGAAGACAGTTTTGGGAAGCTGGGGAGATGGCTCAGTGG
NTAAACGTGCTCCCTTCTTCACTGTTGCGAAGGACCTGGGTTCAGTTCCC
AGCACCCACGAGGCAGCTTACAACTACCTGTAACTCCAGTTCCTAGGGGA
ATCACAAGAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTTGATTCAAATACTCTTAG
GAAGAAAGTTTTAGGAGACAGTTTTTGTTGTTTAGCTAGAAAGATGTAAT
AAAGTTAGAATCAAGAGTAGAATAGCCGGGTGTGGTGGTGCACACCTTTA
ATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGTCCA
GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTCTACAGAGAAAC
CCTGTCTAGAAAAACCAGAAAAAAAAAAGAGTAGAATATACCCATTCCTC
ATAAAATAGTAAAGATTGTTTATTAACCCCCCCACTGAGCTTTCACAGTT
AGACTAAAAAGAGAAATAGGCTTGAGACAAATTGGTGATCAAGGAAAAAC
ATTTATGCTAGATCAGGTCCAAGGATAAAGCCAGAGGTGTGTACTACGAT
AAAGCAAGGCCATGGGAAACTGTTGCTTTGAACCTATATTGAGCTGATAG
AATGAAACACTGCTTTGACATTCTTCATCAACATCCTTCCCTAACTCCCC
TTTTGTGTAATGTTTTATCACTGAGGTAATTTTCTGAAGAACTTTTGTCT
AAGAAGTATAAAGAGGCTGAAGAAAAGAAATAAAGTCATTGGCTTGGGGG
GCGGGGGGTTCTTCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_p20.b1 MSMg01no194_p20.b1 CHROMAT_FILE:
MSMg01no194_p20.b1 PHD_FILE: MSMg01no194_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:03 2005
         (530 letters)



>mm_chr16_35887075_35888003
          Length = 929

 Score =  971 bits (502), Expect = 0.0
 Identities = 521/528 (98%), Gaps = 3/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggaaac-tggctggagtctgaaaatggaagcaggcagccaccaagagtagga 62
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ggaattctggaaacaaggatggagtctgaaaatggaagcaggcagccaccaagagtagga 670

                                                                       
Query: 63  cagaaccatcaaaaccccctggagtcaagggccagaattctagtcatgtgcagtattctg 122
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 669 cagaaccatcaaaaccccctggagtcaagggctagaattctagtcatgtgcagtattctg 610

                                                                       
Query: 123 ctgaaattcccatagagataccaaaatcaacggagactgagctttgccagaaccatgacc 182
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 609 ctgaaattcccatagagataccaaaattaacggagactgagctttgccagaaccatgacc 550

                                                                       
Query: 183 cagccccacttggcacaacctactatagagttgagaataaaatgctttatgaaataatgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cagccccacttggcacaacctactatagagttgagaataaaatgctttatgaaataatgt 490

                                                                       
Query: 243 aattttcagttttgtatggaaaaataaatggtagagagtagcgaaagattactctaggtc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aattttcagttttgtatggaaaaataaatggtagagagtagcgaaagattactctaggtc 430

                                                                       
Query: 303 caaagggattatgaatagaatttagagttgtagaaatatgtagaaatattcataatatat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 caaagggattatgaatagaatttagagttgtagaaatatgtagaaatattcataatatat 370

                                                                       
Query: 363 tataagtccacacctcccaccaatctctgaaaaacaaattccaggtagagtgagaattaa 422
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 369 tataagtccacacctcccaccaatctctgaaaaac--attccaggtagagtgagaattaa 312

                                                                       
Query: 423 ataccttacaaataaaaaacaaatatatgcacccacataggaaaggctaacagttccgga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ataccttacaaataaaaaacaaatatatgcacccacataggaaaggctaacagttccgga 252

                                                           
Query: 483 aatctccttttgattactgatagaaaacaaacttcagaagacagtttt 530
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aatctccttttgattactgatagaaaacaaacttcagaagacagtttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space:   477880
Effective search space used:   477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)