Query= MSMg01no196_f03.b1 MSMg01no196_f03.b1 CHROMAT_FILE:
MSMg01no196_f03.b1 PHD_FILE: MSMg01no196_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:50 2005
(358 letters)
>mm_chr16_43974031_43974787
Length = 757
Score = 669 bits (346), Expect = 0.0
Identities = 352/354 (99%), Gaps = 1/354 (0%)
Strand = Plus / Minus
Query: 5 gaattctcactgtcaagattttattttaaagattcatttgagtgtacaccactcaggtct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaattctcactgtcaagattttattttaaagattcatttgagtgtacaccactcaggtct 498
Query: 65 agacatttgtccagaatatgtgtatgtagccgtgtatttaggaaagatggctgatagtta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agacatttgtccagaatatgtgtatgtagccgtgtatttaggaaagatggctgatagtta 438
Query: 125 acatttataagcattgtcttcctattttaaaaaaatgatacatgaatctgaaaagcttgt 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 437 acatttataagcattgtcttcctatttt-aaaaaatgatacatgaatctgaaaagcttgt 379
Query: 185 gtttagtactgtgagaataaaacgctggcttttggtgtcttaccatttctgctgctgttt 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 gtttagtactgtgagaataaaacgctggcttttgctgtcttaccatttctgctgctgttt 319
Query: 245 gacatttggggccctgtaggttttcattcaccagatccacatgaagcacactctgttctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gacatttggggccctgtaggttttcattcaccagatccacatgaagcacactctgttctc 259
Query: 305 tctgaatagatggcttacctgtcaatcacttcggccggagacttgcgaaagaat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tctgaatagatggcttacctgtcaatcacttcggccggagacttgcgaaagaat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 757
Length adjustment: 9
Effective length of query: 349
Effective length of database: 748
Effective search space: 261052
Effective search space used: 261052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_f03.g1 MSMg01no196_f03.g1 CHROMAT_FILE:
MSMg01no196_f03.g1 PHD_FILE: MSMg01no196_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:50 2005
(484 letters)
>mm_chr16_43892468_43893351
Length = 884
Score = 890 bits (460), Expect = 0.0
Identities = 478/484 (98%)
Strand = Plus / Plus
Query: 1 attaatgtcaagagcagtccaaaaatggactaaaagttttcattaagaggcatgttttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaatgtcaagagcagtccaaaaatggactaaaagttttcattaagaggcatgttttcc 260
Query: 61 atcactgggagtattggagtaaatgctaaaatttcacttaatgttgcactaataaagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcactgggagtattggagtaaatgctaaaatttcacttaatgttgcactaataaagagt 320
Query: 121 aagctggagcatccattgagagggggattagataacccgcacagaaataatgacttcctg 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aagctggagcatccattgagagggggattagataatccgcacagaaataatgacttcctg 380
Query: 181 acctatgatatcttccagtcctgagatgtgtactttttaactcaggtaccattaaaaaca 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctgtgatatcttccagtcctgagatgtgtactttttaactcaggtaccattaaaaaca 440
Query: 241 cttcataggcatacatctgtcaacttagcaattcattgtaatcagtttatttgtgtagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcataggcatacatctgtcaacttagcaattcattgtaatcagtttatttgtgtagca 500
Query: 301 catagttcaaaatcatgtggtattttcctgagagaatcttctacctggcagtattttgag 360
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 501 catagttcaaaatcatgtggtattttcctgagagaatcttctatctggaagtattttgag 560
Query: 361 caaattttatctacgttggcaggtgttatgggcacccagccagccagaacccagcctagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaattttatctacgttggcaggtgttatgggcacccagccagccagaacccagcctagc 620
Query: 421 tgtaaggtttttaagctatttactcacttgctattatttgctaagtgcctactaaatcca 480
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tgtaaagtttttaagctatttactcacttgctattatttgttaagtgcctactaaatcca 680
Query: 481 agct 484
||||
Sbjct: 681 agct 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
