BAC Information

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BAC

Clone NameMSMg01-198C05
Chromosome16 (Build37)
Map Location 40,586,145 - 40,586,434
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198C05.T7 (MSMg01no198_c05.b1)MSMg01-198C05.TJ (MSMg01no198_c05.g1)
ACCAG385588AG385589
length817717
length of high quality
(start - end)
320 (99 - 418)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no198_c05.b1 PHD_FILE: MSMg01no198_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:16 2005CHROMAT_FILE: MSMg01no198_c05.g1 PHD_FILE: MSMg01no198_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCTCTTTTTTCTTTTCTATTCGACCCACCAACAATATATNNTTAAT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGTCTAAGGAGGTTAGATAGGCACATCAAAACTCAGGAAAT
AAATAATTCCACACAAGCAAAATCAAAACAGGAGAAACATGTGTGTACAT
GTACACACAACATTACCCCTAATACCACCACCACCACCAAAATAACAGTA
GTTTATTAAGATCTCTCAATACCAATGATCTCAATTCTCCAATAAAAACA
AATATACAGATAACAGAATAGAGGCAAAAATAAGATTCATACTTCTGCTA
CATTCAAGAAACACACCTCTGAGGATAGACATTACCTCAAATTAAAGGGT
TGGAAAAAGATATTCCTAGTTTTTGTACCTCCCCCCCCCAACAGGTGTAA
TCACTTTAATATCTAGCATAATAGACTTTAAAACAAAACTAACCAAAAGA
GATAGGGAAGGCCACTGCATGTCTATCAAAGAAAAAACTCCACCAGTCAG
GATATATTGTATGAGAAAACAACGTAATTTCAATAATAAGAATAGTTTTA
GAGCAAGGAAGAATATCACTTTATTCATTTGAAAGAAGACAACCCTAGAG
ATGATCACCGTAGGTAAAAAAGCTGGCCACATAAAGAAAAATGCCATGAC
TTTCCTTACCTTTGCCATTAATACCCTTTTCATATAAATTACATAAAATT
GTTGTAAATAATTTGCCCAAAAAGTGGTAATACAAATTTTTCTAAGGGCT
GATATTAGGACGACCAG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGATGTTAATAAAGTAATCTAG
AAGAACATTCATAAGAACATTCACTCCCCTGTGGACACTTGACAGATTTA
GACTGCCCTTCTATGTCTTAGGTGTCCCTGCATCATCTGAAAGGGAGAAG
ACAAATAAGATGGGCATCTTTTGGAGGATTGACACCTAGAAAATATGTCT
TAGGCTTATTTTTCAGCCTGATGAGTGATTTCCAATACAACAAAAGTAAC
TACAAATTGGAATCAGACCCAATATAATCTTGGTAACTAATTTCTAAGAA
AAACCTCAATTTCTTTTTTTGTCCCCCACGCCCCTAAAATTTCCATCTGC
TGGTCATTTAGTGTGATCATCTAACATTACAAAAATGCACAATGAGAGTT
AAACTTACAGTAAATACTGTCATTGGTGGAAACCCATATAGACCAGAGAT
GATACTAGTGTACAGGGAAGTATCAAGTATTTAGAACTTTCTCTATAATA
CCTCCCCCATCTAAACAGGGAGGCACATTAATTCAAAAGAATATTAAAAA
GTTCCAAGTCATTATGATGAGATGCTTTACCATCATTGGTTTAAGAACTG
TGATAGATCAAAAATTAAATGTATGACATAGCTCCCTATATTTGTAAAGT
GTATGGGTTCTTCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_c05.g1 MSMg01no198_c05.g1 CHROMAT_FILE:
MSMg01no198_c05.g1 PHD_FILE: MSMg01no198_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:16 2005
         (291 letters)



>mm_chr16_40585945_40586635
          Length = 691

 Score =  491 bits (254), Expect = e-143
 Identities = 281/290 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgatgttaataaagtaatctagaagaacattcataagaacattcactcccctgtggac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 201 cttgatgttaataaagtaatctagaagaacattcataagaacattcacttatctgtggac 260

                                                                       
Query: 61  acttgacagatttagactgcccttctatgtcttaggtgtccctgcatcatctgaaaggga 120
           |||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 acttgacagatttaggttgcccttctatgtcttaggtgtccctgcatcatcttaaaggga 320

                                                                       
Query: 121 gaagacaaataagatgggcatcttttggaggattgacacctagaaaatatgtcttaggct 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagacgaataagatgggcatcttttggaggattgacacctagaaaatatgtcttaggct 380

                                                                       
Query: 181 tatttttcagcctgatgagtgatttccaatacaacaaaagtaactacaaattggaatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttttcagcctgatgagtgatttccaatacaacaaaagtaactacaaattggaatcag 440

                                                             
Query: 241 acccaatataatcttggtaactaatttctaagaaaaacctcaatttcttt 290
           ||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 441 acccaatataatctcagtaactaatttctaagaaaaacctcaatttcttt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)