BAC Information

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BAC

Clone NameMSMg01-205I11
Chromosome16 (Build37)
Map Location 40,878,901 - 40,879,208
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205I11.T7 (MSMg01no205_i11.b1)MSMg01-205I11.TJ (MSMg01no205_i11.g1)
ACCAG389485AG389486
length732727
length of high quality
(start - end)
320 (46 - 365)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no205_i11.b1 PHD_FILE: MSMg01no205_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:25 2005CHROMAT_FILE: MSMg01no205_i11.g1 PHD_FILE: MSMg01no205_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATAAAGCAGATATCTTTATTCTTTGAATTGTCATATGGGGGAT
TCAACAGGCATGCAGGTGGTTGGCTCGGAGTTTAGAAATTACATTATATA
TATATATATATTAGATCTTATAAAGATATAATACAAATGAAATAATGAAG
AGAAGTTATGCTCCCAGGAGCGAAGAGCAAAGCAACCTCCTTATTGCTGT
ATTTGCATCCTGTACCCTTTACACCATTTCATACAGGAACATAATTCATG
CAGAACTTGAATTTAATGTCCAATGAAGCATCTCTACCACTGACTTTAAA
GAGATATATGCACTGTTTTTGTTTACACGCCCCTCTTGGTGCAGAATTGA
GATTCTGTTGATTCAGCAGGCCCCACCGCACCGTTCCTCTAATCCTGGCA
CTACTTACTGCTACGTGTCCTACATTAGTCACTTTACATGTCTAAGTCCA
ATATTTGTCTTTAAAACTATAGGTTTAAGTTGCTTCCTCTAAAATTTAAC
ATTATAATAAAGATTACAGAGATTTATATCTTACAAAGTCCAAAGTTCTA
TGTGGAAGGACAATGAAACGTATTCTTTGAGTACCAGACAGCACTTAAGG
NTCTCTTGAGTTTTATTTTCATGTATTAAAATTTCTTATAAATAAGAAAG
TTCCTTGTATATGGGCATAGAATATGAGGAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCATAAGCTCATATATTCAAAT
ATTTGGTTCCCAGTGGTAGAACCCTTTGGGAGGGAACAGAAATTAGGTAT
GTCTGTGGGAAAGGTTTCAAATCTCATGGTATCCCAAGTTTGCCCTCTCT
GCCTCTTACTTGTGGATAAGTATGTCAGTTCTCAGTTACTGCTCTATCAT
TATGTCAGTCTGCTTCCTACCGCAACCCCCGCCATGATGATCATGGACTT
TAACCTTTGCAGCTGGGAGTCTAAAATTAAAAGTCTTCTTTTATAAGTTA
CCTTGGCCACATTATTTGTCATGGCACTGGACAATTAACTAAGGCAGGTG
CTAATTTTGTCACTTTGACCCCACCTCGGATCAACTAAAATTTGCTTTTT
TTGGAATCTGCAATGGTGTCATGTATGAATTAACAAGAGCTAGTAGACTA
TCATCCAGAATGGACACTATGCAGCTCAGATATAAAGGGGGCCCTGATAA
GCAGCTATTGCCTTATTCTGACTTTCTTAGTGCCTTGTNAACGAATGCTT
TTAGCCTGTTGCTGTTTTTTAGTTGCTACCCTCCATTGACATCCAAGCTT
AATTCCTTCTCTATTCTAAAGTTGAGTGAACATTACTGGTTTCTTTGAGA
AATCTCTAGGGAACAACTCAGGAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_i11.b1 MSMg01no205_i11.b1 CHROMAT_FILE:
MSMg01no205_i11.b1 PHD_FILE: MSMg01no205_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:25 2005
         (320 letters)



>mm_chr16_40878689_40879408
          Length = 720

 Score =  557 bits (288), Expect = e-163
 Identities = 307/316 (97%), Gaps = 8/316 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcataaagcagatatctttattctttgaattgtcatatgggggattcaacaggc 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 213 gaattctcataaagcagatatctttatt-tttgaattgtcatatgggggattcaacaggc 271

                                                                       
Query: 65  atgcaggtggttggctcggagtttagaaattacattatatatatatatatattagatctt 124
           |||||||||||||| | ||||||||||||||||||| |     |||||||||||||||||
Sbjct: 272 atgcaggtggttggtt-ggagtttagaaattacatt-t-----tatatatattagatctt 324

                                                                       
Query: 125 ataaagatataatacaaatgaaataatgaagagaagttatgctcccaggagcgaagagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaagatataatacaaatgaaataatgaagagaagttatgctcccaggagcgaagagca 384

                                                                       
Query: 185 aagcaacctccttattgctgtatttgcatcctgtaccctttacaccatttcatacaggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagcaacctccttattgctgtatttgcatcctgtaccctttacaccatttcatacaggaa 444

                                                                       
Query: 245 cataattcatgcagaacttgaatttaatgtccaatgaagcatctctaccactgactttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cataattcatgcagaacttgaatttaatgtccaatgaagcatctctaccactgactttaa 504

                           
Query: 305 agagatatatgcactg 320
           ||||||||||||||||
Sbjct: 505 agagatatatgcactg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)