BAC Information

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BAC

Clone NameMSMg01-206D16
Chromosome16 (Build37)
Map Location 74,396,955 - 74,397,562
singlet/doubletsinglet
Overlap geneRobo2
Upstream genenone
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206D16.T7 (MSMg01no206_d16.b1)MSMg01-206D16.TJ (MSMg01no206_d16.g1)
ACCAG389924AG389925
length721719
length of high quality
(start - end)
336 (382 - 717)619 (81 - 699)
definitionCHROMAT_FILE: MSMg01no206_d16.b1 PHD_FILE: MSMg01no206_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:20 2005CHROMAT_FILE: MSMg01no206_d16.g1 PHD_FILE: MSMg01no206_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCTGTAGACCAGGATGGCCTTGAACTCAGAAATCCACC
TGCCTCTGCCTTCCAAGTGCTTTGATTAAAGGTGTGTGCTACCACTGCCC
AGCACACAGTGACTACTTTTAATAAAATGAATAAATGAATTCACTGGAAA
CCTTTCTATCATGACAGAGATAGAAAAAATGAAAAGGGAATTACAAAGGG
AAATGGAAATGGAAAAAATTACAGGAAGTAAAAAAAATGGTTTAAAAAAA
AGAATCCCTAAGAAACCAGGAATATGTCATTCAATGTAGTGAAAGTGATT
CCAGTTTAGTTTTTGAAAGTAAAACGCAAACAATTTCCTCTATACTAAAT
AATTTATCCTATCTTTAAAAACCCCTTCCTCCAAAATTATTTAGACTGAT
TATTGTTATTTATGTGTATTTGTTACTTTATTTGCTACAATGAAAATATT
TGAGGCTAGCCACATAGAGAACAAAGGGCTTATTTGGCTTTTAAAAGTAC
AGTCCATCGTGACTACAGAGGTGGTGGCTTAGAGTTCAGACAACTGGTCA
CCCTGCATCTGTTTCTAGAAGCAGGGTGAAGTGACTTCTGGGGCTCAGCT
TGTTCCCTCCCTCTTATTTAGTTCAGGAGACCAGCTCACGACATGCTTCA
GGTCATATTTAAGGTGGGTTN
NATTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGGTCTTCTGCAATTAT
TTATGCAAAACTCTCCCATATTTAAAACATTCACGTATACTCTGCATACA
TACATCTAAATAACAACTAGGAAAACCTCAAGTCCTTTAAATCTAAGTGC
CATGGGATAACTAACACCTGCCACCCAGAACACCCTCTCATTACATGTTT
CTCTAAACTCTCCAGAGCACTGTAATTAGTTTCTTTATCAAACAAACTGA
ATTGCTATTTGGATATTGTGAAGCAGATCTGCCTAAACACCACAGCGAAG
AAGAGACGAAGAGTATGCTTTTACTCCAGCGTCATGACAAACATTGCCAA
GATGTGAGATAGGCTGACCAACCTTTTTATAGTACATCTGGGGATATTTT
GACTGTTTTATTTCATTTGACAGTCATCACAATTAACAGTTCATAAAACA
CTGAGCTTTGAAAAAGACTACCGCAGGTATTGGACATTTAGCCACTTCGT
AGTCAAAAGTGTGGACACATGTATAAAATCTAATTTGCAAAATGGTCAAA
GTAGTACGAAGACCTTTCTTTCCTGCCTTTCCCCCCATTAAAAGCAGAAG
GTATTAATCACTCCATCTCAATGGCGGCTGACTGAAGCTATTCACTGAGA
AGGGCATTCTTGCTCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_d16.g1 MSMg01no206_d16.g1 CHROMAT_FILE:
MSMg01no206_d16.g1 PHD_FILE: MSMg01no206_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:20 2005
         (619 letters)



>mm_chr16_74396755_74397773
          Length = 1019

 Score = 1050 bits (543), Expect = 0.0
 Identities = 595/619 (96%), Gaps = 11/619 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaggtcttctgcaattatttatgcaaaactctcccatatttaaaacattcacgtatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 taaaggtcttctgcaattatttatgcaaaactctcccatatttaaaatattcacgtatac 260

                                                                       
Query: 61  tctgcatacatacatctaaataacaactaggaaaacctcaagtcctttaaatctaagtgc 120
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tctgcatacatacatctaagtaacaactaggaaaacctcaagtactttaaatctaagtgc 320

                                                                       
Query: 121 catgggataactaacacctgccacccagaacaccctctcattacatgtttctctaaactc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgggataactaacacctgccacccagaacaccctctcattacatgtttctctaaactc 380

                                                                       
Query: 181 tccagagcactgtaattagtttctttatcaaacaaactgaattgctatttggatattgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagagcactgtaattagtttctttatcaaacaaactgaattgctatttggatattgtg 440

                                                                       
Query: 241 aagcagatctgcctaaacaccacagcgaagaagagacgaagagtatgcttttactccagc 300
           ||||||||||||||||||||||||||||||||||||           |||||||||||| 
Sbjct: 441 aagcagatctgcctaaacaccacagcgaagaagaga-----------cttttactccagt 489

                                                                       
Query: 301 gtcatgacaaacattgccaagatgtgagataggctgaccaacctttttatagtacatctg 360
           |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||
Sbjct: 490 gtcatgacaaacattgccaagatgtgagataggctgactaatttttttatagtacatctg 549

                                                                       
Query: 361 gggatattttgactgttttatttcatttgacagtcatcacaattaacagttcataaaaca 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 550 gggatattttgactgttttatttcatttgacagtcgtcacaattaacagttcataaaaca 609

                                                                       
Query: 421 ctgagctttgaaaaagactaccgcaggtattggacatttagccacttcgtagtcaaaagt 480
           || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 610 ctaagctttgaaaaagactaccgcaggtattggacatttagccacttagtagtcaaaagt 669

                                                                       
Query: 481 gtggacacatgtataaaatctaatttgcaaaatggtcaaagtagtacgaagacctttctt 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gtggacacatgtataaaatctgatttgcaaaatggtcaaagtagtacgaagacctttctt 729

                                                                       
Query: 541 tcctgcctttccccccattaaaagcagaaggtattaatcactccatctcaatggcggctg 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 730 tcctgcctttccccccattaaaagcagaaggtattaatcactccatctcaatggtggctg 789

                              
Query: 601 actgaagctattcactgag 619
           |||||||||||||||||||
Sbjct: 790 actgaagctattcactgag 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)