BAC Information

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BAC

Clone NameMSMg01-209B08
Chromosome16 (Build37)
Map Location 23,562,057 - 23,562,346
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkg, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018
Downstream geneRtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209B08.T7 (MSMg01no209_b08.b1)MSMg01-209B08.TJ (MSMg01no209_b08.g1)
ACCAG391749AG391750
length720724
length of high quality
(start - end)
319 (46 - 364)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no209_b08.b1 PHD_FILE: MSMg01no209_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:06 2005CHROMAT_FILE: MSMg01no209_b08.g1 PHD_FILE: MSMg01no209_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
ATTGCTATTTTTCACTGTACACCTGGAGAAGAGTGGCAAGCAATAACTAC
ACCACAGCCTAAAACTGACTATTATTGAACAAATGAGGTTGTGACTTTTG
AATCCAGCCTCACTTAAGTACTCAGAACATGCCCAGGATAAATGCAGATT
CTTTGACACAATGTAGCATGAGTGAGCTCTAGTGCACTTCCCCATTAAAC
ACCTTCTTCTCTGAAGCCTTAGGAATCAGAAACCCTCTGTCATGTTTCTC
TCAGAATTCATATCTCCCAAACACCTATCAGAATGGAACATTAAGCTCTG
CTTTATAACATTCTATAGTTTCTCTAGCCCGCAGCTCTAAGAACTTCCTG
ACTTCTCCCAGATCTTTTGACTCCTCCCAAACCACTTTCAAAGGCCAAAG
AACCATATGATCAGGTTTACCATGGCAGCAACCCCACTCCTGACACCAAC
TTCTGCATAAGTTACTTTTCTTGTTGCTGTGACCGAATACCTTATCAGAA
GTACTTACAAGATTTTTTTTAAAGGATGAAGAGTTTACCTTGGCTTACAA
TTTGAGGGTTGCAGCCATTGATGCAAGAAAGGCATAGCCATAGGAGTTGG
AGGGGGCTTGTCATTTTATCTACAGTCAGGAAGCATAGAACAAACAGGAA
GGGAGCCCGGTCTATAAAAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATGAGAATATTTCCTTATATT
TTATCTATTTTTCTCTCTCATTCTTTCTGTTTGTATTTCTAACAATTGTT
GTCTAGTCAAAAGTGAGGAAATACAGGCAAATATCAAAATAGCTCGGATT
TTTATTAAGAAGTGAAAATACCAGGGACACACATGGCAAGGGAGCTGTGG
CTCAGCCGTGGCTCAGCTGTGGCACCAGGCATGGCTCATCGTGGCACCAG
CTTTCTCTGATGGTGCAGGGAAAAGCTGTTTGCTCAGCAGGCTATTGATG
GTTTTCTGCTGATAAATTCTTGTTCACCCCCACCGAACAAATGACTTTGG
TGCACGCGTGGACTGAAGTTTCCACACCACCATCAGTCATACGTATAGCA
GTCTCACAAAGATATAAAACAGTAGGTTGGGTTTGCCCAGAAGGTCTCTC
TGAGGACACAGATGGCCTGACTGTGCATCAGGTCAGGCTGCATGGGCCCA
CTTCCTCTAGTTTGACTGCGCTTGACCACAAACCAAGCACACTAGCCTTT
TCTCCTCTCCCATGCAGTGTACTCCATCAGCCATCCAGTGTATTCTCTTC
CGACCTTGTTTTCCAGCCCCATTTCTAGGACCTTTAACTGCACTCGTTCT
GATTGAAGCTATTGCCCAGGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_b08.g1 MSMg01no209_b08.g1 CHROMAT_FILE:
MSMg01no209_b08.g1 PHD_FILE: MSMg01no209_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:06 2005
         (292 letters)



>mm_chr16_23561857_23562548
          Length = 692

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatgagaatatttccttatattttatctatttttctctctcattctttctgtttgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cacatgagaatatttccttatattttatctatttttctctctcattctttctgtttgtat 431

                                                                       
Query: 61  ttctaacaattgttgtctagtcaaaagtgaggaaatacaggcaaatatcaaaatagctcg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 430 ttctaacaattgttgtctagtcaaacgtgaggaaatacaggcaaatatcaaaatagctca 371

                                                                       
Query: 121 gatttttattaagaagtgaaaataccagggacacacatggcaagggagctgtggctcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gatttttattaagaagtgaaaataccagggacacacatggcaagggagctgtggctcagc 311

                                                                       
Query: 181 cgtggctcagctgtggcaccaggcatggctcatcgtggcaccagctttctctgatggtgc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 catggctcagctgtggcaccaggcatggctcatcgtggcaccagctttctctgatggtgc 251

                                                             
Query: 241 agggaaaagctgtttgctcagcaggctattgatggttttctgctgataaa 290
           |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 250 agggaaaagctgtttgctcagcgggctattgatggttttctgctgataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)