BAC Information

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BAC

Clone NameMSMg01-213G18
Chromosome16 (Build37)
Map Location 81,005,988 - 81,006,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621365, LOC100039724
Downstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213G18.T7 (MSMg01no213_g18.b1)MSMg01-213G18.TJ (MSMg01no213_g18.g1)
ACCAG394418AG394419
length706704
length of high quality
(start - end)
---286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no213_g18.b1 PHD_FILE: MSMg01no213_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:26 2005CHROMAT_FILE: MSMg01no213_g18.g1 PHD_FILE: MSMg01no213_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTTTATTTTCCATTACTACTCATACATTCGAGTAAGAGGAAGAACTTTC
ACGCATTGACAGAATAATCTGTAATTCCTTAATGGGGGTGTGTGGATTAT
TTTTTTCTTTCCAACCGTTCACGCTTCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGTCTGCTAAGGATCCC
GTAATCAGATTGCATCCGAAACCTTCTCGCTGAACACCAGCTCTAACTAC
CACTGCTGACAGTCTTTATTTAGCAAAACAGACTAGGACAGAGACAAGAA
CTTCTTCTGTTGTGAAAGCCACACCCCCAGCACAGCGCTGACTCCCTGCT
AGCTGATTTATCGACCCCCCCCCCCGGCATCATAAATGGTCATGXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCAATTTTTTA
ATGGGGTTATTTGACGTACGCATGCCTCTATCGAATAATGAAAGGGGAAG
GCACTGAGTGAGGTCTGCCATTCATTCTTGGTTGTTCCTTCTAAAGCACT
CCCATCCCTCAAATGGGAATTTTGATGACAATGTCCTTAATATAAGATAT
TTGGCAGACTGAAAAGAAAAAAATCATTAATAGAAAAATAGAGGCCCAAA
GGTTGATCATTATTGACTCAAAAATTCCCTTAAACCATGGGAAATATCTC
TTAGTCTATTTTCAAGGGCCCACTACCTCTAGCAATGATGTCTATCTAAT
TCAGTCAGTTTAAACACCCGCCACCAGCTCTAAGACTCTCACCCTGATGA
TTGGCACATAGAATCTGCCTCTTTAAAATAATTTTCTCTTTGTTCTTCCT
CCATTATCTTTAAGAGCTTGATCAAATTGATCCTCAATAAACCCTTATTT
CTGCCTATGTTGTGTGTGTGGCTGAGGGCTCCATAGAAATATGGCAGGCA
GAAAAATAAACTGTGAAGAGGTGAACATGGAAATGTGGTTTAGCCTGACC
AGATCAGTCAGGATGGATCAAACTTTGAGGGAGTCTAATACCAGACATTT
TATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_g18.g1 MSMg01no213_g18.g1 CHROMAT_FILE:
MSMg01no213_g18.g1 PHD_FILE: MSMg01no213_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:26 2005
         (286 letters)



>mm_chr16_81005741_81006427
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttcagttctgagcccaattttttaatggggttatttgacgtacgcatgcctctatc 60
           ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 534 tttgttcagttctgagccccattttttaatggggttatttgacctaagcatgcctctatc 475

                                                                       
Query: 61  gaataatgaaaggggaaggcactgagtgaggtctgccattcattcttggttgttccttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaataatgaaaggggaaggcactgagtgaggtctgccattcattcttggttgttccttct 415

                                                                       
Query: 121 aaagcactcccatccctcaaatgggaattttgatgacaatgtccttaatataagatattt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 414 aaagcactcccatccctcaaatgggaattctgatgacaatgtccttaatataagatattt 355

                                                                       
Query: 181 ggcagactgaaaag-aaaaaaatcattaatagaaaaatagaggcccaaaggttgatcatt 239
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 354 ggcagactgaaaagaaaaaaaatcattaatagataaatagaggcccaaaggttgatcatt 295

                                                          
Query: 240 attgactcaaaaattcccttaaaccatgggaaatatctcttagtcta 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 attgactcaaaaattcccttaaaccatgggaaatatctcttagtcta 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 687
Length adjustment: 9
Effective length of query: 277
Effective length of database: 678
Effective search space:   187806
Effective search space used:   187806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)