Query= MSMg01no215_f14.b1 MSMg01no215_f14.b1 CHROMAT_FILE:
MSMg01no215_f14.b1 PHD_FILE: MSMg01no215_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:59 2005
(664 letters)
>mm_chr16_39679120_39680186
Length = 1067
Score = 1170 bits (605), Expect = 0.0
Identities = 652/675 (96%), Gaps = 16/675 (2%)
Strand = Plus / Minus
Query: 5 gaattctattgcctgatactataatttagtagtttgatttcattctgatacttatttatg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 gaattctattgcctgatattataatttagtagtttgatttcattctgatacttatttatg 928
Query: 65 aatttatttctccattctaatacttcttttaatttttgattatagtgcagttatataatc 124
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 927 aatttatttctccatt-taatacttcttttaagttttgattatagtgcagttatataatc 869
Query: 125 ttccctttcctttaatccctccaaactctctcatataatcttcatttttcattagttgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ttccctttcctttaatccctccaaactctctcatataatcttcatttttcattagttgtt 809
Query: 185 aat----acacacacacacacattccacacatattcctaaatacatgaatataacctgtt 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 aatacacacacacacacacacattccacacatattcctaaatacatgaatataacctgtt 749
Query: 241 ctggtgatgggttc--------ttttttttttttaagttcctcctcta-tttttttttca 291
|||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 748 ctggtgatgggttcttttttttttttttttttttaagttcctcctctattttttttttca 689
Query: 292 aaatatttactatctggtcttttaataaatgtttcatatatctcatacgtttaaaaagtc 351
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 688 aaatatttactatctggtcttttaataaatgtttcatatatctcatatgtttaaaaagtc 629
Query: 352 acaaaatatttaacattttccattacattcccaagagaacaaataccattttaggaaatc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acaaaatatttaacattttccattacattcccaagagaacaaataccattttaggaaatc 569
Query: 412 --tttttttttttttttaaattcatagtgaaagcactgaaatgcaatgattccccaaaaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttttttttttttttttaaattcatagtgaaagcactgaaatgcaatgattccccaaaaa 509
Query: 470 actgtggatcattaactaagtattaggtcctaggttataaaaatgtagcatgtagggcct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 actgtggatcattaactaagtattaggtcctaggttataaaaatgtagcatgtagggcct 449
Query: 530 agtatagcacatgcctttagttcaagtattcagaggcagaggtagatggatcttgtgagt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agtatagcacatgcctttagttcaagtattcagaggcagaggtagatggatcttgtgagt 389
Query: 590 tcacagtcatccctatttactgaagaccagccagtactacacaaggattcctttcccaga 649
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 388 tcacagccatccctatttactcaagaccagtcagtactacacaaggattcctttctcaga 329
Query: 650 tgaatgtaaaaagag 664
|||||||||||||||
Sbjct: 328 tgaatgtaaaaagag 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1067
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1057
Effective search space: 691278
Effective search space used: 691278
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_f14.g1 MSMg01no215_f14.g1 CHROMAT_FILE:
MSMg01no215_f14.g1 PHD_FILE: MSMg01no215_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:59 2005
(652 letters)
>mm_chr16_39603151_39604202
Length = 1052
Score = 1261 bits (652), Expect = 0.0
Identities = 652/652 (100%)
Strand = Plus / Plus
Query: 1 attgtttgttcataattttcattttcaccatatcttcttgttttgtaagggggtaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtttgttcataattttcattttcaccatatcttcttgttttgtaagggggtaaaatt 260
Query: 61 tttcataataaattctagggtatgtagctcctaaattaggctacttatgagttttttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcataataaattctagggtatgtagctcctaaattaggctacttatgagttttttccc 320
Query: 121 ttagaagacaaaacacccttttacatacaaaaagttgcttgaccaatttttaacacttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagaagacaaaacacccttttacatacaaaaagttgcttgaccaatttttaacacttgg 380
Query: 181 aaatcatctaggttttattttgaggtgataaaaggaattttttcaaatgctgtcaaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcatctaggttttattttgaggtgataaaaggaattttttcaaatgctgtcaaatga 440
Query: 241 aatatgcatctccaaatgctaccaaatgaccaaatctattcttgtatttgtgtatgtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatgcatctccaaatgctaccaaatgaccaaatctattcttgtatttgtgtatgtaag 500
Query: 301 ataggtcctgtaggcatttaaaattcttaaatttctcaagcagtattttaataagccaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataggtcctgtaggcatttaaaattcttaaatttctcaagcagtattttaataagccaca 560
Query: 361 tttttaaaccaaatttagctcaaaaaaaagaaagaaacctaaaacaaaacagctgctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttaaaccaaatttagctcaaaaaaaagaaagaaacctaaaacaaaacagctgctgct 620
Query: 421 atttcttcaatgcaaatagtactagttacttatttatttacctgctacgttctgcagcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttcttcaatgcaaatagtactagttacttatttatttacctgctacgttctgcagcat 680
Query: 481 taaaaataaataggctaggatgatggcttagcagttagaggaatggttgctcttccagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaaataaataggctaggatgatggcttagcagttagaggaatggttgctcttccagag 740
Query: 541 gaccagggttcaattctcagcactcagatagcgactcacagccatgtaactcagttctag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaccagggttcaattctcagcactcagatagcgactcacagccatgtaactcagttctag 800
Query: 601 ggagtcagaaaccctcttctggcttttgtaaacatcagctatccatgaagtg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggagtcagaaaccctcttctggcttttgtaaacatcagctatccatgaagtg 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
