BAC Information

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BAC

Clone NameMSMg01-215H10
Chromosome16 (Build37)
Map Location 91,734,010 - 91,882,941
singlet/doubletdoublet
Overlap geneItsn1
Upstream geneMrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653
Downstream geneAtp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215H10.T7 (MSMg01no215_h10.b1)MSMg01-215H10.TJ (MSMg01no215_h10.g1)
ACCAG395704AG395705
length753684
length of high quality
(start - end)
234 (127 - 360)341 (80 - 420)
definitionCHROMAT_FILE: MSMg01no215_h10.b1 PHD_FILE: MSMg01no215_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:08 2005CHROMAT_FILE: MSMg01no215_h10.g1 PHD_FILE: MSMg01no215_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,882,713 - 91,882,941)(91,734,010 - 91,734,350)
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAAGTTCTTCCGGAGGGGGGAAAGACTCTCCTCTCTTCAATG
AAACTTGAAACCTGAATTATCTCCCACAGCCGCTAAACACCGAGGGAAAT
AAATAAACATGCCTGGTTTCTGTTATGAAGAAGCCAAAGAATATAATAAG
TTAGTCAATGACTATTACGCTTCTAGGAAGTCGAAGGGACACAGAAGTGA
GCAGAGACTGTTCTTTTCTTAAGGGAAACCCACAAGTTTAGGGGAGAGCC
CTCAGGAAAGGCAGATTATTAGTATACAAACATGTGGCATTGAAGGAGGG
GGGTGTGTTTTTGTTATATGCCCCCCCCCCCCCAGCGNGTTCCTTGCCTT
GTATCTTCACTCTCTTCTTACCCCCCACAAAAAAAAAATTTCCTTGGGTG
TGGTTGTTTATTCCCCCTGCACTTCGTTACCTTTTATTCTTCCTGTGTTT
TTATTCCCCGTTGCTTGTTAGTTTCTACCACTCCTGCTCCTCATCTCTCT
TATAAATATTTCAACCGCCCCTATATATTATCCCTCTTCCCACTGTCTTC
AATACCGTTTTTCCTTTCCCCGTTCTTCTCCTTTCTTTTATTTTCCCTTT
TTCCCCTCTTTTCTTGCCTCTCCCATTCTCCCTTTTTCTTCTCCATCCCT
TTCTCTTTCTTTTATACCCCCCCAGTATACCTCTTTATATTTACTTCCCC
TTC
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCACTAGCCACAATAGATT
ATTTTTTAACTTGTTTTCTCCCCATTTAAAAAAACAAACAAAAAAACAAA
AACCAAAAACAAAACCCTTCCATGTCTATAATATAAATTTAATAGCTGGA
TAATATATCACTTTATGGATCTGTGAGAATTTGGTTAGTTTATTATACAT
TATTATAGTGTGTCATGACAGACTCTCCCTAATAGCATTTCTTTTTAACT
TATTTTTGAAATTTTACTAATTTTCATAAAATTTTAAGTAGGTGTTTTGT
CCGTAAATATTTTTTTCTAAACCACCCGTATCACCATGGTGATGGCCAAG
GAGGCCAGAAAAGGGCACTGCACCCACTGGAACTGGAGTTACTCATGGTT
GTAAGCCACCACGTGGGTGCTAGGGATTGAATCCCGGGTCACCTGGAAAA
GGAGTCAGCCTCTCCAGTCTGCTACTGGTATTTCTTAAGGATTTTTTCCC
CCTTTTAGATGTGTTTCTAGGTACATGGCTCACTGGATAAAGTGCTTTCT
GTCCACGCACGATGAACTGAGTTTGGATCCCCAGAGCCCACCTAAAGCTG
GTATGCTGACATGTTCAAGAATATTACAAGCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_h10.b1 MSMg01no215_h10.b1 CHROMAT_FILE:
MSMg01no215_h10.b1 PHD_FILE: MSMg01no215_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:08 2005
         (234 letters)



>mm_chr16_91882513_91883146
          Length = 634

 Score =  412 bits (213), Expect = e-120
 Identities = 225/229 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagccgctaaacaccgagggaaataaataaacatgcctggtttctgttatgaagaagcca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cagccgctaaacactgagggaaataaataaacatgcctggtttctgttatgaagaagcca 370

                                                                       
Query: 61  aagaatataataagttagtcaatgactattacgcttctaggaagtcgaagggacacagaa 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 369 aagaatataataagttagtcaatgactattacgtttctaggaagtcgaagggacacagaa 310

                                                                       
Query: 121 gtgagcagagactgttcttttcttaagggaaacccacaagtttaggggagagccctcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtgagcagagactgttcttttcttaagggaaacccacaagtttaggggagagccctcagg 250

                                                            
Query: 181 aaaggcagattattagtatacaaacatgtggcattgaaggaggggggtg 229
           ||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaggcagattaaaagtatacaaacatgtggcattgaaggaggggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no215_h10.g1 MSMg01no215_h10.g1 CHROMAT_FILE:
MSMg01no215_h10.g1 PHD_FILE: MSMg01no215_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:08 2005
         (341 letters)



>mm_chr16_91733810_91734550
          Length = 741

 Score =  598 bits (309), Expect = e-175
 Identities = 333/341 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcactagccacaatagattattttttaacttgttttctccccatttaaaaaaacaaac 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 201 atgcactagccacaatagattattttttaacttgttttctcagcatttaaaaaaacaaac 260

                                                                       
Query: 61  aaaaaaacaaaaaccaaaaacaaaacccttccatgtctataatataaatttaatagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaacaaaaaccaaaaacaaaacccttccatgtctataatataaatttaatagctgg 320

                                                                       
Query: 121 ataatatatcactttatggatctgtgagaatttggttagtttattatacattattatagt 180
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||
Sbjct: 321 ataatatatcactttatggatctgtgagaatttggctagtttattagacattagtgtagt 380

                                                                       
Query: 181 gtgtcatgacagactctccctaatagcatttctttttaacttatttttgaaattttacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtcatgacagactctccctaatagcatttctttttaacttatttttgaaattttacta 440

                                                                       
Query: 241 attttcataaaattttaagtaggtgttttgtccgtaaatatttttttctaaaccacccgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 441 attttcataaaattttaagtaggtgttttgtccgtaaatatttttttctaaaccacgtgt 500

                                                    
Query: 301 atcaccatggtgatggccaaggaggccagaaaagggcactg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaccatggtgatggccaaggaggccagaaaagggcactg 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)