BAC Information

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BAC

Clone NameMSMg01-216L04
Chromosome16 (Build37)
Map Location 13,491,714 - 13,491,921
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
Downstream geneParn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216L04.T7 (MSMg01no216_l04.b1)MSMg01-216L04.TJ (MSMg01no216_l04.g1)
ACCAG396481AG396482
length8271,153
length of high quality
(start - end)
208 (103 - 310)310 (496 - 805)
definitionCHROMAT_FILE: MSMg01no216_l04.b1 PHD_FILE: MSMg01no216_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:48 2005CHROMAT_FILE: MSMg01no216_l04.g1 PHD_FILE: MSMg01no216_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCCCTTCTCCTCCTTTTTTCTTTCCTCTCTCTCACCTCACATTNTCCT
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGT
ATTCATCTTAATCTATTCTTAACTCTTTACTTTCACCCACAGTCTATGAT
CTCCCAGAGGTGGGCCTTCATCACCTTCCACCCTGCCCTATGTCACTGCT
ATTAGGAGGGTGAACTTTTTGGAAGACCTTAAGGTTTTCTGGAAATGCAC
ACAAGAAGAAAGCATTTTCTAAGAAAAGTCTGCCTCTATTGCTGCCCATG
TACCCTCAATGTTAGGCCTGGCTAACTTCAAGTGTCCTTTATCTGCTGCC
AGACTTGTCTGAATCCAGCCCCCCTTGTCAAGGGAGCCTTCTGTGTCATT
CCCACCATCCCTGTGCTCGGTTCCCCCAGCAGACCCTCCTGTCCATATCC
CTTAGTTGCCACGCTCTGCACCCCCCCGCAATAAAAAAAAATGATTTATT
CGTGCGGCATTGTCCCTTTCTCTTTTCCTACTTTTGCCATGCCATCACTA
TTTATCCCTGCAGCTCATGGACCTGACTCCATGTTTCTAGCTCTTTTTTT
CCCCAGTATCTCCTTTTTCTATCGCTTCGTCTTTCCCCCTGTCTTTCCCT
CTTTCCCTCTTTTCCCCTTTTTCATCTCTTTTCCCCCTTTTCTTTTTTTC
TTTTCTTTTGTCCACTTCCCCTTCCCTTCCTTTCCCTTTCCTTCCCCCTT
TTTTACTTCCTTTCTTCCTTATTTCTCCCCCTTCCTTTTTCACTTTGTCC
CTTTTTTCCACTCCTTTTCACTTTTTN
NNGGATCAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCTTACTTTCCAACGTTGAGGCATTTATTT
GTTCTACTTACACAAAAGGAGATATGCATCCCTATTTGCTTAGCTATGCA
TACTCAGAAAAAATACAGAAGACATTAGTACTGCCTTTGAATACCTATGA
AGCCTGGGCAGATCTGAGAACTGGGAAAATGACAAGCATCTCTTAAAAAC
ACTCAGTTTAATAAAAAAGATCTAAGTAAAACCATGTTTCCTAGGATTTA
GAGGAAACAGTGAGAAAAAAGTTATGCTTGTATCTTAGAAATGAAGTTAT
TTTCTAATGTTAATTTGTTTGTTTTGAGATAGGATTTCTCTGTGTAGTCC
TGGCCCTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCTTTT
TTTTTTCCCCCCCCCTCTGCTTCCCAAGTGCTGGAATAAAATATATGTGC
CACCACTGCCCAACTTAATTTTTTTATTAATATCAATAAGCTCTATGAAG
CCAGTAGACATATTTATTTATTTATTTGTTTATTTGCAGGATTGAAGGTG
GAATCTAGTACTATTTATTTATTTATTTATTTATTTAGGTGTCTTGAGAC
AGGGTTTCTCTCTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA
GGCTGGCCTCGAACTCAGAAATCCACCTGCCTGTGCCTCCTGAGTGCTGG
GATTAAAGGCGTGCGCCACCACGCCCGGCTACATTTTTTTAATTAAATAA
AAATGTATTCATGTGTACTTAGCCTGAATGTGTATGTGTGGACTTGGGAG
TGCAGCTGCTTAAAGTGCAAAAAATTGTGAAATACCTCTGGAAATGTTGT
AAGCTCCCGTGTGGATCCTGGGAAATGAACTCTCTAATTATATTGCCTTC
TTAATCACTGGAAAAAATTTCTGGGGAGTGCCCTCTCCCCCTCCCCTGGG
GAAATTTTTTTTTTTCATCAAAAATCCCTCCCCCCTCCCAGAAACAATAC
ATTATATATCCTTTCATCAAATCACGCAAGAAAATCTTTTTGTGCCCTTC
GCAGTACATTTTCCTCTTATTTAATCCTCTCCTTAATTTACTTATAAAAA
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_l04.b1 MSMg01no216_l04.b1 CHROMAT_FILE:
MSMg01no216_l04.b1 PHD_FILE: MSMg01no216_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:48 2005
         (208 letters)



>mm_chr16_13491514_13492121
          Length = 608

 Score =  371 bits (192), Expect = e-107
 Identities = 204/208 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcttaatctattcttaactctttactttcacccacagtctatgatctcccagaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tcatcttaatctattcttaactctttactttcacccacagtctatgagctcccagaggtg 260

                                                                       
Query: 61  ggccttcatcaccttccaccctgccctatgtcactgctattaggagggtgaactttttgg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccttcatcaccttccaccctgccttatgtcactgctattaggagggtgaactttttgg 320

                                                                       
Query: 121 aagaccttaaggttttctggaaatgcacacaagaagaaagcattttctaagaaaagtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaccttaaggttttctggaaatgcacacaagaagaaagcattttctaagaaaagtctg 380

                                       
Query: 181 cctctattgctgcccatgtaccctcaat 208
           |||| ||||| |||||||||||||||||
Sbjct: 381 cctccattgcggcccatgtaccctcaat 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)