BAC Information

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BAC

Clone NameMSMg01-217P04
Chromosome16 (Build37)
Map Location 39,843,154 - 39,843,465
singlet/doubletsinglet
Overlap genenone
Upstream geneIgsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217P04.T7 (MSMg01no217_p04.b1)MSMg01-217P04.TJ (MSMg01no217_p04.g1)
ACCAG397294AG397295
length728786
length of high quality
(start - end)
320 (46 - 365)287 (81 - 367)
definitionCHROMAT_FILE: MSMg01no217_p04.b1 PHD_FILE: MSMg01no217_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:49 2005CHROMAT_FILE: MSMg01no217_p04.g1 PHD_FILE: MSMg01no217_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTTTACACACACCCACACACGCATGCACACGCGAACACACACACACAC
ACACAATTCGTTTAAGAGAATGAATATATTCTCTACATTTCCCTGGCACA
ATGACTTAGCAAAACACATAATTTTCTACTTTTCCACTGTGAAAAGGCCT
TTATCCCTTATGTCTGTGTACTAGCTCCTATTTATTCTTTATAACCTTGA
ACTATTTTCATCTTATCTGAGAAACCAACCTTACCCTAAACCTTTAAATA
TTTTTATCTTTAATATTTTCATCTGACCTTAACTATTTATATTACAATTT
TGAGTTGGATTATTATATCTCCTACCCCCACCACACTTTAACTTGCTCAT
GTTTGCTAACACCCCCTATAAACCCGACGAATATGAACTCTTTGGTATAT
GTATTTTTGATGCTTTACTATTCATTATACAATAGAATTTGTAGCTGTTT
GCTAACTAGTAGGATATTTAGCAAGATAAAAAAGTGTCTAAAAATAACAC
TCAAAAATCACTTTTAAGTACTTCACAATATTATAGATGCCTTAGGGAAT
TTTTAATTGCTCTGGTCCTCTTAACATCTTATAATACCCCGCAGCTTTCA
TCGATTCACCTTGGCTACCTGAAACCCTGTGCCATCTATCGATTTATTTT
GACAGTTCCCTGTCTTATTTTTCTTTTT
NAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCTGGGCTCACAGGAAG
TTGTGAGGAGCAGGTGTGGCAGCAGTCCCAAGATGGCACCCGGGACTGCA
GCTAAGTCTTATGACTTGCACCTGACTTCCTCATACACCTGAAAATAAGC
CACGACCATCGTGAAAGCTGCACAGGTGCACCATGATGCTGGCAGTGCAA
ACAAGTCCATATTTGGTGGAGACCTGCCCCTGCTGCCCTGATTGGCTGAA
GCTGCGTGCGTGGTGAGGTGGCATGGCCTGCCATGAGTGGATGGGGGGCT
GAGAGTATATAAGCAGACTTCCCTGGGTGCCCGGCGTCCCTGTAGCAGCA
TCGAGGCGTTCTGCAAAAGCCCCCTATGAGAAAAAAAACCCAACCTTGTT
TGGGTGTTCCTGGCCGGCCCAAAAAACAAAACACAGAGTGAGGGGTTTTT
TTTTTTTTTTTAATCATAAATACATTGCCGTGTCGTCTTTTTTNTCCCNN
NNCTTTTTCGAAGGGATTTTTGCGTCGCCTCCCTAATTTTGTGGGTTTTA
TGTGGAAGGAACTTGGTGGATATATGTGGAACCTGAAAACTTCTCCGTTT
TAATCCCCCCCAACTCTTCCCCTTTATTTTCTTTTCCCCGTTCCTTTCCT
ACCAATCCCCCAATTTCTGTTTCGTGTTTTTCTTTTTTTTTTTTCTCTCT
CATTTCGATTAAATTTTTCTACCTTCTGTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_p04.b1 MSMg01no217_p04.b1 CHROMAT_FILE:
MSMg01no217_p04.b1 PHD_FILE: MSMg01no217_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:49 2005
         (320 letters)



>mm_chr16_39842894_39843613
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattttacacacacccacacacgcatgcacacgcgaacacacacacacacacacaattcg 65
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 572 aattttacacacacccacacacgcatgcacacgggaacacacacacacacacacaattcg 513

                                                                       
Query: 66  tttaagagaatgaatatattctctacatttccctggcacaatgacttagcaaaacacata 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tttaagagaatgaatatattctctacatttccctggcacaatgacttagcaaaacacata 453

                                                                       
Query: 126 attttctacttttccactgtgaaaaggcctttatcccttatgtctgtgtactagctccta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 attttctacttttccactgtgaaaaggcctttatcccttatgtctgtgtactagctccta 393

                                                                       
Query: 186 tttattctttataaccttgaactattttcatcttatctgagaaaccaaccttaccctaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttattctttataaccttgaactattttcatcttatctgagaaaccaaccttaccctaaa 333

                                                                       
Query: 246 cctttaaatatttttatctttaatattttcatctgaccttaactatttatattacaattt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cctttaaatatttttatctttaatattttcatctgaccttaactatttatattacaattt 273

                       
Query: 306 tgagttggatta 317
           ||||||||||||
Sbjct: 272 tgagttggatta 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)