BAC Information

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BAC

Clone NameMSMg01-218E18
Chromosome16 (Build37)
Map Location 47,226,100 - 47,226,382
singlet/doubletsinglet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218E18.T7 (MSMg01no218_e18.b1)MSMg01-218E18.TJ (MSMg01no218_e18.g1)
ACCAG397517AG397518
length765710
length of high quality
(start - end)
319 (44 - 362)283 (80 - 362)
definitionCHROMAT_FILE: MSMg01no218_e18.b1 PHD_FILE: MSMg01no218_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:16 2005CHROMAT_FILE: MSMg01no218_e18.g1 PHD_FILE: MSMg01no218_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCAAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAGAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAACAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCCGTCCGGTGGTTCCTCAGAA
AATTGGACATAGTACTACCGGATTTTTCATCAATATCTCTCCTGGGCATA
TATCCAGAATATGCCCCATCCTCCCAAGCAGGCCCCATGNTCCACTATGT
TCATAGAAGNCTCACCCCCCCTTTTCAGAAAATGAAAAGAACCCGGATGG
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCGACACAATGGA
GTACTACTCAGCTATTAAAAAGAAAGAATTTATGAAATTCCTAGTCAATT
GGATGGACCTGTAGGACATCTTCCTGAGTGAGGTAATACTTTCATAAAGG
AATTCTCACAATATGTATTCTCTGATACGCGTATATTATCTTACAACTTT
ACTATACCTAGATATTTGATTCTTTTTCCTTCACTATTGACTATCCTTAA
TAATCCCTTCTGCAATTTTGCCACCTATGCCCCTCTTTTTAATTCACTAA
CCTACCCCTTTAGCT
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATGCTGTACAGTACTAAAA
AAACACAGATAGGTGGCTCAGAGCAATCACACAGTTTATAGATACTTGTG
TTTTTCTTTATATGTTTAAAATATTTAGTTAATGTATAAACTGGATTCAT
TTTTTAAAATTTTACTTTATTTTTAATTTATTTTTTACACTCCATATTCC
ATCCCCCCCATCCACCCTCTACCCTCCAACTGCACCACATCCCACACCTC
CTTCCCACCCCACCCAATCCCCACGTGTATACACCCACCCCCTACACCAC
CTGGCCTCTAAACTTTTTGTTTGCCTCCACCCTCCTGAGGGTAAAGTGCA
TCATCTCTGAATGAGCACAGATTCACAACAAGACTACTGTATGTGTCTTG
GGGCTCTCATATCAGCTTCTGTATGCTGTCTGTTTGGTGGTTCAGTGTTT
GAGAGATTTCAGGGGTCCAGATTAATTGAGACTGCTGGTTCTCCTACAGG
ATTGCCTTTCTTCTCAACTTCTTTCAGCCTTCCCTAATTCAATAATAGGG
GTCAGCTGCTTCTGTCCATTGGTTGGGCGCAAATATCTGCATCTGACTCT
TTCAGCTCCTTGTTGTGTCTTTCAGAGGGCAGTCATGATACCTTTTGTGA
GTATTCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_e18.g1 MSMg01no218_e18.g1 CHROMAT_FILE:
MSMg01no218_e18.g1 PHD_FILE: MSMg01no218_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:16 2005
         (283 letters)



>mm_chr16_47225900_47226582
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgctgtacagtactaaaaaaacacagataggtggctcagagcaatcacacagtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgctgtacagtactaaaaaaacacagataggtggctcagagcaatcacacagtttat 260

                                                                       
Query: 61  agatacttgtgtttttctttatatgtttaaaatatttagttaatgtataaactggattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatacttgtgtttttctttatatgtttaaaatatttagttaatgtataaactggattca 320

                                                                       
Query: 121 ttttttaaaattttactttatttttaatttattttttacactccatattccatccccccc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttaaaatcttactttatttttaatttattttttacactccatattccatccccccc 380

                                                                       
Query: 181 atccaccctctaccctccaactgcaccacatcccacacctccttcccaccccacccaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccaccctctaccctccaactgcaccacatcccacacctccttcccaccccacccaatc 440

                                                      
Query: 241 cccacgtgtatacacccaccccctacaccacctggcctctaaa 283
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 cccacgtggatacacccaccccctacaccacctggcctctaaa 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)