BAC Information

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BAC

Clone NameMSMg01-218F03
Chromosome16 (Build37)
Map Location 92,566,390 - 92,566,676
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
Downstream geneRunx1, EG666023, LOC100040747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F03.T7 (MSMg01no218_f03.b1)MSMg01-218F03.TJ (MSMg01no218_f03.g1)
ACCAG397532AG397533
length739747
length of high quality
(start - end)
274 (43 - 316)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no218_f03.b1 PHD_FILE: MSMg01no218_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:18 2005CHROMAT_FILE: MSMg01no218_f03.g1 PHD_FILE: MSMg01no218_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTACTTGAGAGAGAGCACCAGCAATTTAAAACTTGTGGCCTATGAGGA
ACAGAACATCCAGTCCTAGCCGGTGTTTATCAGTGCAGCCCATGGGCACT
GGAGAGACAGCTCCGTGGTCAGAGCACTGGCTGCTCTCGAAGAGGAGCCA
GGTTTGGTTTCTAGTACACTCATGGCAGCTCTCAACCATTCATAATTCCA
GTCCTGGGGGATTCAGCGCCCTCCTCTGGCTTCTGTGAGCACTGCGTGCA
TATGGTGCACAGGCATACATGTAGGCAAAACACTCCTACATATAAGCTAT
TGTATGATCTTTTGTTTACCCCCCCACTCCCCCTCAGTCTACAAATCTCG
TATAGATCGAGCTTACCCCCCCCTGAGATAATGCTTCAGACCGTGGAGGA
GTCCAATCTGCCTCATAGGTTTGAACCATTTTACCCGTCTGCCCGTCAAT
ACCCTTCGTTTAATGCAGTAGATTATTTCTAGGCTTACTCGTGTTTGCAC
CACTCTTTACGTTGTCGCACCCTTTTTCCCCCCTTCCTGCATTCTTCCCT
GTTACTCCTGCTCACGTTTTTTGTCTTTTTATTATTGTCCTGCTTTTCCA
CACCTACCTTATTCTCCTTCTCTCCCCCTCGTTTTTCCCCTTTTCTACCT
TTTTTTCCTCCCAGTTCTCTTCCCCCCCCTCTTTCTTTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGTGGCTTCAAGCCCAGGAACATCTTTTC
AAGGTATTGTGTTCTCTCACCCGACCTTTGCCTGCAAGCACAGACACCCC
TCCCTCTACTCCACACGCCAGCGGGAAGATAAGGGGTGTTTTCTAGGAGG
ACCCTTTAGCAAAATTTCTTTGATCTCAAGCCACACCCCCCTCCCCAGCT
CCAGTAACTAAGCCTATCTTCCCTACAGGAGGCAGGCACACATGTGCTGA
CTGTCACAGGTCCCCAAGGCTTTAGAGCCAGTATCAAATGGACACTCCGT
AGCCTCTGTTTTTCTTTTCACCCAACGCCCCGACCTGTAAGCATGAGATC
AATATGTGAACAATGCCCACCCAATAAAACAAAAGACCGGACGCATAAGC
CGACGACAATCTCCTAGACTGAACCTGGTTGATTAACGGGTCAGCCTGCC
TAAAACAGCACGTGTATCGGTGTACCTGCTCTGTGACCGACCTCTTTAAC
CATGGACGGATGGAGAGCCCCTCCGGTAACCTTTCTCCAGTGTGCAATAC
CCTCTTTGCTCCTCGACAGTTATCCCTTCTTTCTTAGGGTCCGAACTGCT
CCACTGGGGTGTTGCGAATCCTTACCCGGATGCCGGGCAGCCGCCCCTCC
CCCCACCCTCTTATCACTTTCTTTTCCTGAACAAAACACTCCGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f03.g1 MSMg01no218_f03.g1 CHROMAT_FILE:
MSMg01no218_f03.g1 PHD_FILE: MSMg01no218_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:18 2005
         (290 letters)



>mm_chr16_92566190_92566879
          Length = 690

 Score =  493 bits (255), Expect = e-144
 Identities = 279/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggcttcaagcccaggaacatcttttcaaggtattgtgttctctcacccgacctttgcc 60
           |||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 201 gtggcttccagcccaggaacatcttttcaaggtattgtgttctctcaggtgacctttgcc 260

                                                                       
Query: 61  tgcaagcacagacacccctccctctactccacacgccagcgggaagataaggggtgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaagcacagacacccctccctctactccacacgccagcgggaagataaggggtgtttt 320

                                                                       
Query: 121 ctaggaggaccctttagcaaaatttctttgatctcaagccacacccccctccccagctcc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggaggatcctttagcaaaatttctttgatctcaagccacacccccctccccagctcc 380

                                                                       
Query: 181 agtaactaagcctatcttccctacaggaggcaggcacacatgtgctgactgtcacaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaactaagcctatcttccctacaggaggcaggcacacatgtgctgactgtcacaggtc 440

                                                          
Query: 241 cccaaggctttagagccagtatcaaatggacactccgtagcctctgt 287
           ||||||||  |||||||||| ||||||||||||||||||||||||||
Sbjct: 441 cccaaggcgatagagccagtgtcaaatggacactccgtagcctctgt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)