Query= MSMg01no232_o23.b1 MSMg01no232_o23.b1 CHROMAT_FILE:
MSMg01no232_o23.b1 PHD_FILE: MSMg01no232_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:32 2005
(320 letters)
>mm_chr16_73960923_73961641
Length = 719
Score = 590 bits (305), Expect = e-173
Identities = 314/317 (99%), Gaps = 1/317 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttctaagaaggtgtccaaaaaagagattgtggctcacattgcccttccctatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctaagaaggtgtccaaaaaagagattgtggctcacattgcccttccctatg 263
Query: 64 aggaaaacagagtgatagatgccaggcttcactatattcccaaacagcagtcaccataag 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggaaaacagactgatagatgccaggcttcactatattcccaaacagcagtcaccataag 323
Query: 124 acagttttgtgtaagagaatgtcttgcagaatgtcttctgaagccaaatgagtgaggtcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagttttgtgtaagagaatgtcttgcagaatgtcttctgaagccaaatgagtgaggtcc 383
Query: 184 tgattcaaccttaggagtatattatgatcagattcaaatggactaaaactgaagatgtag 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 tgattcaaccttaggagtatattatgatcagattcaaatggactaaaactgaaggtgtag 443
Query: 244 caccaagttttaagaaaagatgaatttatttttttcttttgtttttcatataggtcttta 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 caccaagttttaagaaaagatgaatttatttttt-cttttgtttttcatataggtcttta 502
Query: 304 tgtgagatatgcattct 320
|||||||||||||||||
Sbjct: 503 tgtgagatatgcattct 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_o23.g1 MSMg01no232_o23.g1 CHROMAT_FILE:
MSMg01no232_o23.g1 PHD_FILE: MSMg01no232_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:32 2005
(671 letters)
>mm_chr16_74079107_74080179
Length = 1073
Score = 1087 bits (562), Expect = 0.0
Identities = 582/590 (98%), Gaps = 4/590 (0%)
Strand = Plus / Minus
Query: 1 cttatctgcagaattcaactaagatcctgtatatcagacctttcaggtgaccacttggca 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 589 cttatctgcagaattcaactaagatcctgtatatcagacctttcaggtga-gacttggca 531
Query: 61 aggcaagaagcccaaactt---ctatcattttggttgtagccaaacaaaagaaacacaca 117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aggcaagaagcccaaacttctcctatcattttggttgtagccaaacaaaagaaacacaca 471
Query: 118 aacaaaaaacaattatgtggaaaatctatttgtcttactagaaagacaagggctattgtt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aacaaaaaacaattatgtggaaaatctatttgtcttactagaaagacaagggctattgtt 411
Query: 178 taatagaggtcatatttactcaagtaatcattactgtgaatgtccttttgtcactatgag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taatagaggtcatatttactcaagtaatcattactgtgaatgtccttttgtcactatgag 351
Query: 238 gtatgacaattagtcaagagacagtttccaggcaacagtatatgtataaaatcttctctc 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 350 gtatgacaattagtcaagagacagtttccaggcaacagtatatgtataaaatcttcactc 291
Query: 298 atctccactcatattatttaatgattttagaatagatatggccactatttcatatataac 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atcttcactcatattatttaatgattttagaatagatatggccactatttcatatataac 231
Query: 358 tgagtaaacctatgtgctcaacaaaatcagttataaattaatatatctatgtatattaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tgagtaaacctatgtgctcaacaaaatcagttataaattaatatatctatgtatattaaa 171
Query: 418 ttaatttttcttcttatatcagacattatatgatataataatttcaagctttgttatttc 477
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 170 ttaatttttcttcttatatcagacattatataatataataatttcaagctttgttatttc 111
Query: 478 atattaagaaactaatacagtaaaacattccttttaatatgtagcactaagaaatgtaaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 atattaagaaactaatacagtaaaacattccttttaatatgtagcactaagaaatgtaaa 51
Query: 538 aagaaactgttgttcttgagaaatttacattttaaggcatccatgttcta 587
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 aagaaactgttgttcttgagaaatttacattttaaggcatccatgttcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1073
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1063
Effective search space: 702643
Effective search space used: 702643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
