BAC Information

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BAC

Clone NameMSMg01-233I17
Chromosome16 (Build37)
Map Location 29,342,024 - 29,482,176
singlet/doubletdoublet
Overlap geneAtp13a5, Atp13a4
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls
Downstream geneOpa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233I17.T7 (MSMg01no233_i17.b1)MSMg01-233I17.TJ (MSMg01no233_i17.g1)
ACCAG399714AG399715
length750748
length of high quality
(start - end)		324 (45 - 368)673 (76 - 748)
definitionCHROMAT_FILE: MSMg01no233_i17.b1 PHD_FILE: MSMg01no233_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:16 2005CHROMAT_FILE: MSMg01no233_i17.g1 PHD_FILE: MSMg01no233_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,481,857 - 29,482,176)(29,342,024 - 29,342,696)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGACCAGATTGTGCAATACTGAACTATGTCAGAATGGCTTTTAG
GGACCTAAATATAACACTAGAGCATGCCTATTAGCTCAATCTATCACATA
ACATCTAGAACACACATGTTAGCTCAGATGATTAGTAATTCAGCCACGTT
CAGCCATTCTTAGACTTTGAATATTACTATGTGCAATGTATGTTTGATTT
TATCATCTCTCCCCTTGCATGGAATAATATCCAGTTTCACTGTTTTGTTC
TCCCCCCCCACCACTATTTTTGGGTTTTGTTTCTAATGAATGTTTTAATG
GGTTTAAATGTTTTTAATGGGCGCCCCGCGCGCCTGCATGCCTGTGAATG
CATGTCTAGATAGTGCCCACGCAAGACAAAAATTGTTGGATCCTGGGAGT
GGAGTTACAGAGGGTGTGAGATTCCCTGTGCTTGTTGGTGATTGAATTCA
TGTTCTCTAGAAGAGCAACCATTGCTCTTACCCTCTGAGCTGTGACTCCC
GCACCTTCACTTGATTTTATTTAATTCATTTATTTAATGATTACCTCTTT
GCCTTCTACCGTTGCTTTAAGGATGTTCCCCTTTTCTCCCTGCTTTTTCC
GGTTATTGGCCATACTCTTTTCCATTTTCCATTTCTTTCCTTCCGTATCT
CCGTGTTTGTCCCTCTATCCCCAATTGCATTTTGTCTTTCCTTCTTTTTT


CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATGAATGTTGGCAGTGGTGAGGC
AACCAGAAGTATTAGGCTTGAAGCCCAGACACATAAGGAAAGGTCAAGGA
TTATATTCTACCACAAAAGGTCTGATGAGGTGGCAGAGGAGCAAGGCAGA
GGTCATTCTGTGTGGCCTCACCAGACAGTGTAGGCCAAACACGGTTAAGT
AGGATTGCCTAACATCTGTCACTATACATTAGGGGAGAGACTGCTAAGAT
GGCAGACATCCCCCGTCTCAGAGGATGGATCTTGACCAAGTCCACAACTG
AGACATCAAGAAGGGAATTGCATACTGGTTGTAGCTGGCACTTCTAGGTT
CACAAGGGGTTTTCTCCAATTCTGAGATATTCAGATCATATGGTGTACTG
GCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAG
CTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTC
AATTAGTGATCAAGGGGGAAAGGCTGGTAGTCTTGGGTTCTATAAGAGAG
CAGGCTGAGCAAGCCAGGGGAGGCAAGCCAGTAAAGAACATCCCTCCGTG
GCCTCTGCATCAGCTCCTGCTTTCTGACCTGCTTGAGTTACAGTCCTGAC
TTCTTTGATGATGAACAGCAGTATGGAAGTGTAAGCTGAATAAACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_i17.b1 MSMg01no233_i17.b1 CHROMAT_FILE:
MSMg01no233_i17.b1 PHD_FILE: MSMg01no233_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:16 2005
         (324 letters)



>mm_chr16_29481653_29482376
          Length = 724

 Score =  588 bits (304), Expect = e-172
 Identities = 316/320 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagaccagattgtgcaatactgaactatgtcagaatggcttttagggacctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcaaagaccagattgtgcaatactgaactatgtcagaatggcttttagggacctaa 465

                                                                       
Query: 65  atataacactagagcatgcctattagctcaatctatcacataacatctagaacacacatg 124
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 464 atataacactacagtatgcctattagctcaatctatcacataacatctagaacacacata 405

                                                                       
Query: 125 ttagctcagatgattagtaattcagccacgttcagccattcttagactttgaatattact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttagctcagatgattagtaattcagccacgttcagccattcttagactttgaatattact 345

                                                                       
Query: 185 atgtgcaatgtatgtttgattttatcatctctccccttgcatggaataatatccagtttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atgtgcaatgtatgtttgattttatcatctctccccttgcatggaataatatccagtttc 285

                                                                       
Query: 245 actgttttgttctccccccccaccactatttttgggttttgtttctaatgaatgttttaa 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 actgttttgttctcccccaccaccactatttttgggttttgtttctaatgaatgttttaa 225

                               
Query: 305 tgggtttaaatgtttttaat 324
           ||||||||||||||||||||
Sbjct: 224 tgggtttaaatgtttttaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no233_i17.g1 MSMg01no233_i17.g1 CHROMAT_FILE:
MSMg01no233_i17.g1 PHD_FILE: MSMg01no233_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:16 2005
         (673 letters)



>mm_chr16_29341824_29342896
          Length = 1073

 Score = 1294 bits (669), Expect = 0.0
 Identities = 672/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgaatgttggcagtggtgaggcaaccagaagtattaggcttgaagcccagacacata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcatgaatgttggcagtggtgaggcaaccagaagtattaggcttgaagccaagacacata 260

                                                                       
Query: 61  aggaaaggtcaaggattatattctaccacaaaaggtctgatgaggtggcagaggagcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaaggtcaaggattatattctaccacaaaaggtctgatgaggtggcagaggagcaag 320

                                                                       
Query: 121 gcagaggtcattctgtgtggcctcaccagacagtgtaggccaaacacggttaagtaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagaggtcattctgtgtggcctcaccagacagtgtaggccaaacacggttaagtaggat 380

                                                                       
Query: 181 tgcctaacatctgtcactatacattaggggagagactgctaagatggcagacatcccccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctaacatctgtcactatacattaggggagagactgctaagatggcagacatcccccg 440

                                                                       
Query: 241 tctcagaggatggatcttgaccaagtccacaactgagacatcaagaagggaattgcatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcagaggatggatcttgaccaagtccacaactgagacatcaagaagggaattgcatac 500

                                                                       
Query: 301 tggttgtagctggcacttctaggttcacaaggggttttctccaattctgagatattcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggttgtagctggcacttctaggttcacaaggggttttctccaattctgagatattcaga 560

                                                                       
Query: 361 tcatatggtgtactggctagttttgtgtcaacttgacacagctggagttatcacagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatatggtgtactggctagttttgtgtcaacttgacacagctggagttatcacagagaa 620

                                                                       
Query: 421 aggagcttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggagcttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaatta 680

                                                                       
Query: 481 gtgatcaagggggaaaggctggtagtcttgggttctataagagagcaggctgagcaagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgatcaagggggaaaggctggtagtcttgggttctataagagagcaggctgagcaagcc 740

                                                                       
Query: 541 aggggaggcaagccagtaaagaacatccctccgtggcctctgcatcagctcctgctttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggggaggcaagccagtaaagaacatccctccgtggcctctgcatcagctcctgctttct 800

                                                                       
Query: 601 gacctgcttgagttacagtcctgacttctttgatgatgaacagcagtatggaagtgtaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gacctgcttgagttacagtcctgacttctttgatgatgaacagcagtatggaagtgtaag 860

                        
Query: 661 ctgaataaaccct 673
           |||||||||||||
Sbjct: 861 ctgaataaaccct 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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