Query= MSMg01no233_m13.b1 MSMg01no233_m13.b1 CHROMAT_FILE:
MSMg01no233_m13.b1 PHD_FILE: MSMg01no233_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:34 2005
(274 letters)
>mm_chr16_40420148_40420819
Length = 672
Score = 480 bits (248), Expect = e-140
Identities = 267/274 (97%), Gaps = 2/274 (0%)
Strand = Plus / Minus
Query: 1 aatcattgaggtatctatctcaaacgttattttttaaaacaatgagataaaaaccaaaat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 472 aatcattgaggtatctatctcaaacgttattttttaaaacaatgagataaaacccaaaat 413
Query: 61 gtttatctgtttttttccccctattgatcttattcatatagagttttctgtactggaatt 120
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtttatctg--tttttccccctattgatcttattcatatagagttttctgtactggaatt 355
Query: 121 tgactttagtctaattattcggatttaattaccaacttttttcaagccatgaatggccac 180
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 354 tgactttagtctaattattaggatttaattaccaacttgtttcaagccatgaatggccac 295
Query: 181 atgactcgcaatctgccattcatagtgctgtcccttctgtgaaacagctgttttgctgac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atgactcgcaatctgccattcatagtgctgtcccttctgtgaaacagctgttttgctgat 235
Query: 241 gatcacacatttgcttcttctcttgccacagtag 274
||||||| ||||||||||||||||||||||||||
Sbjct: 234 gatcacatatttgcttcttctcttgccacagtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 672
Length adjustment: 9
Effective length of query: 265
Effective length of database: 663
Effective search space: 175695
Effective search space used: 175695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no233_m13.g1 MSMg01no233_m13.g1 CHROMAT_FILE:
MSMg01no233_m13.g1 PHD_FILE: MSMg01no233_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:34 2005
(615 letters)
>mm_chr16_40268663_40269681
Length = 1019
Score = 1125 bits (582), Expect = 0.0
Identities = 603/618 (97%), Gaps = 14/618 (2%)
Strand = Plus / Plus
Query: 1 aatcctatttattctccttggttattttaattctctggagaaatttcttgtttgaggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcctatttattctccttggttattttaattctctggagaaatttcttgtttgaggatt 260
Query: 61 ccacagcttgaacattgactttaagttattaaaagaaaacttgatatgaggagaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacagcttgaacattgactttaagttattaaaagaaaacttgatatgaggagaaaaata 320
Query: 121 atggaaaaaagttagggaagacataaaaaaaatctgaaatgtgtttataaagttgacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggaaaaaagttagggaagacataaaaaaaatctgaaatgtgtttataaagttgacaca 380
Query: 181 gtatattattaaggaatgaaaacaaaatcttcttgacatagagtaaataactttaagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatattattaaggaatgaaaacaaaatcttcttgacatagagtaaataactttaagtct 440
Query: 241 ttacatttgttaaatatggtcctgagggctatacaacatgttctatcctaaaacatagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacatttgttaaatatggtcctgagggctatacaacatgttctatcctaaaacatagtg 500
Query: 301 tcatagatttggctatcatcatttctgtaattgtaacaactgaatatttgccttatgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatagatttggctatcatcatttctgtaattgtaacaactgaatatttgccttatgtgt 560
Query: 361 ccctgcaaaatgaagtaa----agatcaagtaacgtactcaaaatgctcatctaagaaat 416
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgcaaaatgaagtaagtaaagatcaagtaacgtactcaaaatgctcatctaagaaat 620
Query: 417 gagaaggagggggtttggacctagtaagcattgttctagaacagtacctcccaacctgtg 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggaggagggggtttggacctagtaagcattgttctagaacagtacctcccaacctgtg 680
Query: 477 gattgcagccttgaatggcccttttacaagagttctctgagaccatcctgcatataagat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattgcagccttgaatggcccttttacaagagttctctgagaccatcctgcatataagat 740
Query: 537 gtcaacattatgattcataagagtacaaaaattatagttatgaagtagcaacaaaataat 596
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcaacat----------aagagtacaaaaattatagttatgaagtagcaacaaaataat 790
Query: 597 tttatagttaagggtcaa 614
||||||||||||||||||
Sbjct: 791 tttatagttaagggtcaa 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1019
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1009
Effective search space: 610445
Effective search space used: 610445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
