Query= MSMg01no236_d16.b1 MSMg01no236_d16.b1 CHROMAT_FILE:
MSMg01no236_d16.b1 PHD_FILE: MSMg01no236_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:45 2005
(680 letters)
>mm_chr16_74388210_74389288
Length = 1079
Score = 1166 bits (603), Expect = 0.0
Identities = 658/681 (96%), Gaps = 11/681 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcgcaatctatcgtcttgccaatgtatttgactagacatcatagagtgttttc 63
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 687 ggaatactcacaatctatcgtcttgccaatgtatttgactagacttcatagagtgttctc 628
Query: 64 ttcatgtgaaattacccacctgcagaaaaattaatgcttttacattgtttttgttaaaat 123
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 627 ttcatgtgaaattacaaacctgcagaaaaattaatgctcttacattgtttttgttaaaat 568
Query: 124 tccatcttctattgtcacaataaaaaattaactacaatcagtagttaatttagttatatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tccatcttctattgtcacaataaaaaattaactacaatcagtagttaatttagttatatt 508
Query: 184 gttgccatagttatctttatttttaaatgagcttaaaagaagactatattgttatatgtt 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 507 gttgccatagttatctttatttttaaatgagcttaaaagaaggctatattgttatatgtt 448
Query: 244 tttcagaaaaaaagtaagatctagaaatttatttgaacttcttaggataaattttaagta 303
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttcag-aaaaaagtaagatctagaaatttatttgaacttcttaggataaattttaagta 389
Query: 304 tacaaaaagttatagcaaagccttttacaatttaaattttatgttacatttatttagcta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacaaaaagttatagcaaagccttttacaatttaaattttatgttacatttatttagcta 329
Query: 364 caaataaaaacagaagactagtaatgttttaaacgtaatagaagttattttattctaaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caaataaaaacagaagactagtaatgttttaaacgtaatagaagttattttattctaaga 269
Query: 424 caaaaattgaagaagttttaaagaccttaaaaacttgggacagacaaaggcttgagtt-a 482
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 268 caaaaattgaaggagtttttaagaccttaaaaacttgggacagacaaaggcttgagttaa 209
Query: 483 aaaaaacagtcattatcaccatcattatcattatcatcattg---tcatcatcatcatca 539
|||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 208 aaaaaacagtcattatcacc------atcattatcatcattgtcatcatcatcatcatca 155
Query: 540 tatcattgttttcaataataaatgtgcagtttctcactgagctgttttgattctctcttg 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tatcatcgttttcaataataaatgtgcagtttctcactgagctgttttgattctctcttg 95
Query: 600 agaaaaaagtcagcatggactattttctccaataaaatacttttcttaataactttctgc 659
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 agaagaaagtcagcatggactattttctccaataaaatacttttcttaataactttctgc 35
Query: 660 tattcataggatctattttcc 680
|||||||||||||||||||||
Sbjct: 34 tattcataggatctattttcc 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_d16.g1 MSMg01no236_d16.g1 CHROMAT_FILE:
MSMg01no236_d16.g1 PHD_FILE: MSMg01no236_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:45 2005
(342 letters)
>mm_chr16_74301792_74302533
Length = 742
Score = 623 bits (322), Expect = 0.0
Identities = 337/342 (98%)
Strand = Plus / Plus
Query: 1 aatatattgaaaaatatattgtatacatttgaaaaacttaggtatctttgaatatagagt 60
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 201 aatatattgaaaaatatattgtatacacttgaaaaacttagggatctttgaatatagagt 260
Query: 61 aataacatatgtgcaattgataggaaaatttctaactaaaaattcataataattctatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataacatatgtgcaattgataggaaaatttctaactaaaaattcataataattctatag 320
Query: 121 atgaactgtcatagtctcaggagacaaaaataataatatactaagaaaagggtcactatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaactgtcatagtctcaggagacaaaaataataatatactaagaaaagggtcactatc 380
Query: 181 tgcaaataatcttcaactgatactgacaaatatacagaggaacacatacaggtattccag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tgcaaataatcttcaactgatactgacaaatatacagaggaacacatacaggtattgcag 440
Query: 241 ccaagaaataacaagtaactccattagatgaaagcatataaatatttctttatactatag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ccaagaaataacaagtaactccattagatgaaagcatataaatatttctttatactttag 500
Query: 301 atttgtgtatattttcattttgtcatatctggagaagtacaa 342
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 atttgtgtatattttcattttgtcatagctggagaagtacaa 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
