BAC Information

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BAC

Clone NameMSMg01-236J12
Chromosome16 (Build37)
Map Location 43,560,340 - 43,560,852
singlet/doubletsinglet
Overlap geneZbtb20
Upstream geneBC002163, LOC667484
Downstream geneLOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236J12.T7 (MSMg01no236_j12.b1)MSMg01-236J12.TJ (MSMg01no236_j12.g1)
ACCAG401801AG401802
length720766
length of high quality
(start - end)		517 (44 - 560)114 (76 - 189)
definitionCHROMAT_FILE: MSMg01no236_j12.b1 PHD_FILE: MSMg01no236_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:12 2005CHROMAT_FILE: MSMg01no236_j12.g1 PHD_FILE: MSMg01no236_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGACATTTGCTGCATGCCCTGGTGATATCTTTCATTTTCATCAGAC
TACCATGATTTAATGATCATTACTAACAATTTTCCTTGACAAAAGCGTGT
TCCAGGACTTCCCTTCCTGGGCTGCTTGGTGTTCTTTATTCTTTTATCTT
TCTCTCTGGTAAAAACTAAGCAGTCTTGCTTATAGATAAGAACAGGGCAG
CCTTTGCTTTTCTCGGTTTAGTCTTATTTAAAAGCCTTAGAGACATGTGG
TGGCATTTGCTGAGGTGACTATTATAATAGTGGATGGTAGGTTTTTCAAC
AATGGATGATACATTCTACCTGAACCTTTACCATCCTAAATGATCCCCTG
CAGAAATCAGAGTTGAACCATTAGGCCTCTAAGTACTCTAGTAACCAATA
ACATGATTAGAACATCCTACTGTGTGCATAGGCCTGCAGTAGATGTTGAT
GTTTCTGTAAACTACTAGACCTCTATTCTCTAGAGGACTGTGACACACTC
CCAATGATACATAGAGTAGGCAGTAAAGAGTAACTATTTATCTAAATCCT
AGTCAGTGTCTGAGGTCATCATCACCCATAGCATTCTTCCCAATAGAGCT
TCATAATGACTAGTTCACATCCTGTGGGCCTTGTATGGTAAGAAAGTTTA
TGTACCAATGAAAGGCAATN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCCCCTAACTGGGCTGCCCTGTC
TGGCCTCAGTGGGAGAGGACGTGCCTAGCCTTGCAGAGACTTGATATGCC
AGGGAAGAGGGACTGGGGGTGGGGGGTTTGTGCTCCACATTCTCAAAATA
TAAGGGGAGGGGGAAAGGATGGTCAAGGATGTACCTGGAGGCGGTATTTT
ATCCTTTATAATGTGAACAATATTTCATTCCTGATTATTGAACGAACTCA
TTTATACCAGATCTAATCAATGTTATTTGTTGCACACCCAACAATTGTCC
AGAGGACATAAATTTGATGGTCCCCCGAGCCTCCCCCCAGAAATGTTTTT
AGAAATATGTTCTCCTCGCCCCCCTAAGAAAAAAAAAATAAAACTGTGTG
GGTGTGATCTCGCACTAATGAAACTATGATAGATCCCCCCACTCCTCCCG
CGCTTTATATTTTTATTCCATTTTTTTTACCCCTCCCCCCTCCGCCATAT
ATATGGGTCATTTTTCTTCCATAAGGTATTTTATTTTAACCCACACATCT
CTTTTTCTTTTATATTTGTTCTCCTCCCTTTACCTACTCCCCTAATCTGA
TTTATCCTGTATTATTTGTTTCCTCTCTCTCCTCCCCCCGCCCTTTTTTT
TATTTAACATTTATGACATTACCGAGCCACTCCTATATTATTTTTAATAA
TCTCCCCCCCCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_j12.b1 MSMg01no236_j12.b1 CHROMAT_FILE:
MSMg01no236_j12.b1 PHD_FILE: MSMg01no236_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:12 2005
         (517 letters)



>mm_chr16_43560136_43561052
          Length = 917

 Score =  938 bits (485), Expect = 0.0
 Identities = 506/513 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagacatttgctgcatgccctggtgatatctttcattttcatcagactaccatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagacatttgctgcatgccctggtgatatctttcattttcatcagactaccatg 264

                                                                       
Query: 65  atttaatgatcattactaacaattttccttgacaaaagcgtgttccaggacttcccttcc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttaatgatcattaataacaattttccttgacaaaagcgtgttccaggacttcccttcc 324

                                                                       
Query: 125 tgggctgcttggtgttctttattcttttatctttctctctggtaaaaactaagcagtctt 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggctgtttggtgttctttattcttttatctttctctctggtaaaaactaagcagtctt 384

                                                                       
Query: 185 gcttatagataagaacagggcagcctttgcttttctcggtttagtcttatttaaaagcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttatagataagaacagggcagcctttgcttttctcggtttagtcttatttaaaagcct 444

                                                                       
Query: 245 tagagacatgtggtggcatttgctgaggtgactattataatagtggatggtaggtttttc 304
           |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||
Sbjct: 445 tagagacatgtggtggcatttgctgaggtgacgacaataatagtggatggtaggtttttc 504

                                                                       
Query: 305 aacaatggatgatacattctacctgaacctttaccatcctaaatgatcccctgcagaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacaatggatgatacattctacctgaacctttaccatcctaaatgatcccctgcagaaat 564

                                                                       
Query: 365 cagagttgaaccattaggcctctaagtactctagtaaccaataacatgattagaacatcc 424
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagagttgaattattaggcctctaagtactctagtaaccaataacatgattagaacatcc 624

                                                                       
Query: 425 tactgtgtgcataggcctgcagtagatgttgatgtttctgtaaactactagacctctatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tactgtgtgcataggcctgcagtagatgttgatgtttctgtaaactactagacctctatt 684

                                            
Query: 485 ctctagaggactgtgacacactcccaatgatac 517
           |||||||||||||||||||||||||||||||||
Sbjct: 685 ctctagaggactgtgacacactcccaatgatac 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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