BAC Information

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BAC

Clone NameMSMg01-236L15
Chromosome16 (Build37)
Map Location 44,689,216 - 44,689,409
singlet/doubletsinglet
Overlap genenone
Upstream geneDrd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
Downstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236L15.T7 (MSMg01no236_l15.b1)MSMg01-236L15.TJ (MSMg01no236_l15.g1)
ACCAG401900AG401901
length705701
length of high quality
(start - end)
622 (46 - 667)194 (110 - 303)
definitionCHROMAT_FILE: MSMg01no236_l15.b1 PHD_FILE: MSMg01no236_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:22 2005CHROMAT_FILE: MSMg01no236_l15.g1 PHD_FILE: MSMg01no236_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTTCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGCTTTTATCACAATTGCC
CTGCAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTT
ATCCT
TGGCGGCCGCCTGGTTCGGAAGTGGAGGTGACCTATAGAAGTTTTCGCAA
AAAATCAGTCTCTGGNCAGTGGCGGGGGGCTTTTATTATCACCTTAGGTT
CTCACATGGAGAGACGGGTGTTGGGAAATTATATCTCTCAATCAAGGTTT
GTTGGCATGGGAGACTATTCCTAGGGAGCTAGCCACAACTTTCTGTGGGA
TCAATGTCACCCAACACCGTATTCCACATTTCCAAAGCTTATTCCCAAAC
TTTCCCTGTGTTCCCTCCTTGGGTAAACTTTAAATTGTGGCAGCTATACC
TTTATAATCTGCCCTGGCACATGAAATCAAAGATTCTTATTGTTTTTATT
TCCCCCCCCCCCTTTCCAANTTGNANTTTCTTATTATATAGCTTCAACTC
ACAAAAAAAAAAACAGGTCTGTATTTGTAGCCAGAAGCTGGCTACTGGCC
CCAAATGCATTTTCTTCGGATCACAGTGCTAACACTAGTAAATTAAAAAA
CAATCAACATTACCATTCTCTCAATGGCGCTTCATAGTTTCTATAAGAAT
TTTTCAGTCAGACACTGTACCCCCCGGGGTGTCCAGACCAGGAAAGTGAC
TCACATAATCTGATCAGGATTGTGTGGCTATGCCACCATATTTCTAGACC
ATGCCTTTAGGTCTCAGGTACCGAATGTCTTGTGGTCATGGAAGGAAGTC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_l15.g1 MSMg01no236_l15.g1 CHROMAT_FILE:
MSMg01no236_l15.g1 PHD_FILE: MSMg01no236_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:22 2005
         (194 letters)



>mm_chr16_44689016_44689609
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagacgggtgttgggaaattatatctctcaatcaaggtttgttggcatgggagactatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagacgggtgttgggaaattatatctctcaatcaaggtttgttggcatgggagactatt 260

                                                                       
Query: 61  cctagggagctagccacaactttctgtgggatcaatgtcacccaacaccgtattccacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctagggagctagccacaactttctgtgggatcaatgtcacccaacaccgtattccacat 320

                                                                       
Query: 121 ttccaaagcttattcccaaactttccctgtgttccctccttgggtaaactttaaattgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaaagcttattcccaaactttccctgtgttccctccttgggtaaactttaaattgtg 380

                         
Query: 181 gcagctataccttt 194
           |||| |||||||||
Sbjct: 381 gcagttataccttt 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)