BAC Information

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BAC

Clone NameMSMg01-237I18
Chromosome16 (Build37)
Map Location 95,044,253 - 95,044,492
singlet/doubletsinglet
Overlap geneKcnj6
Upstream geneSim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a
Downstream geneLOC666201, Kcnj15, Erg, Ets2, LOC625548, LOC100040997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237I18.T7 (MSMg01no237_i18.b1)MSMg01-237I18.TJ (MSMg01no237_i18.g1)
ACCAG402465AG402466
length721741
length of high quality
(start - end)
315 (5 - 319)245 (56 - 300)
definitionCHROMAT_FILE: MSMg01no237_i18.b1 PHD_FILE: MSMg01no237_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:24 2005CHROMAT_FILE: MSMg01no237_i18.g1 PHD_FILE: MSMg01no237_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGATCCGCGGAATTCTCCACGATCCCCTCTGCCAGATCCGGGGTCTAA
GGTCTTAGGGTGAAGTCTTTGATCCGTTTAGTGCTCAGGTTTGTGGAAAC
TGAGAGATGAGACTCCAGCTTCATTCTTCTACATGTGAATATCCAACATG
ATCACATCTGGGCATGTGGGGTTCAACATATGTAAAACAAACAGTTGTAA
TCCACTATGTCAATGATCTCAAGGATAAAACGACAGACGATCATCTCATT
CAATGCAGAAAAAGCCTTTGGAAAAAAAATCTAATATTTCGTTATGATGC
AACTCCTGGAGAATTGAGGGAATTTGATTTTCTCCGAACATGCCCAAGCC
CTGTACAGCAGGCCTACACCTGACGCCCTGCTGAAGAGGAAAACAACTCA
AAGAATTTATAATAAAACCGACAACAAGACATAGATGCCCACCCTCCATG
CACCTACTCAATAGACTACTGCCAAGCCTTATCAAAAGCAACAACTAAAC
TGAACCAGACAAAGAGAATTAAAATGGGAAACTAAGAAGTCAAAGCATCT
TTGTTTCCAGATGACATGATTTTATATTTGAAGGACCCTAAAGACATCAC
TAGAAAGCCCCTATACATGATAAGCACACTCATCAAAGAACCAGGATAAA
AAGTTAACACGGGAAAACGGTTAGACTTCTTAACACATAACATGAAATCA
GTGAAACTATCTTTCTCAGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAAATGATTTGGTCGAGTTAATAGCACAAGGTTGAATCTTTCTAA
CAGCCATATGGGAGATGTCTCAAAAATTTCATGGAACATTTAGAAGTGGA
ATACAGAACAGTGAGCCTCCATTCTCAGAGGTAGTTTGCCCTGTCCTCAG
TGGCCTCAGAAGAGCCGGGGGTAATCTACATTCACGGCCACCGTTGGCAG
GCATTGTACTGATGAATGTTGCTATTTATGGGACTGCAGGATCCTTTCTG
GTCGTTTCCAGTGTTCCTTATTATTTCAAATATCATCAGTTTATTTTTCT
CCCCAGGCGACCACCGCAGAGGCCACCTTGGCTTGTGGACGGCCCCACTT
CAGTCAATATAATTCACATTGACTCTTCGGAGCACCTTCAAAGGGGATCA
TCTGACATTCTGTCCAAGCTTCAAAGTTCCTGGAAACAATGGAGCCTCTT
GTGAGGACTGGTCTTTCCCTCTGCCTCCCTACAAGGCTTTGTTCTTTATT
GCATTTCACCCTTGGCCTATGAGAAGGAAATAATCTGCCCTGGTTTGAGT
CTGTACCTAGGAAGGTCACGGGGGTAGGGGGGCGGTTTGGCGTTAAGATG
GATCATCATCATTCTCATTTCCTATTTGAACAATCTGTAGCTAGCCTGTT
AATGTTTTATCTGCGCCTTTTACTTTATAATTCTACTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_i18.g1 MSMg01no237_i18.g1 CHROMAT_FILE:
MSMg01no237_i18.g1 PHD_FILE: MSMg01no237_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:24 2005
         (245 letters)



>mm_chr16_95044048_95044692
          Length = 645

 Score =  397 bits (205), Expect = e-115
 Identities = 233/245 (95%), Gaps = 5/245 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgatttggtcgagttaatagcacaaggttgaatctttctaacagccatatgggaga 60
           |||||||||||||     ||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 206 aaaatgatttggt-----taatagcacaaggttgaatctttctaacagggatatgggaga 260

                                                                       
Query: 61  tgtctcaaaaatttcatggaacatttagaagtggaatacagaacagtgagcctccattct 120
           ||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 261 tgtctcaaaaaattcatggaacatttagaagtgggatgcagaacagtgagcctccattct 320

                                                                       
Query: 121 cagaggtagtttgccctgtcctcagtggcctcagaagagccgggggtaatctacattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaggtagtttgccctgtcctcagtggcctcagaagagccgggggtaatctacattcac 380

                                                                       
Query: 181 ggccaccgttggcaggcattgtactgatgaatgttgctatttatgggactgcaggatcct 240
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 381 ggccaccgttggcaggcattgtagtgatgaatgttgctatttatgggactgcagaatcct 440

                
Query: 241 ttctg 245
           |||||
Sbjct: 441 ttctg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)